KEGG   PATHWAY: fsu03030
Entry
fsu03030                    Pathway                                
Name
DNA replication - Fibrobacter succinogenes
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
fsu03030  DNA replication
fsu03030

Organism
Fibrobacter succinogenes [GN:fsu]
Gene
Fisuc_1984  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Fisuc_1942  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Fisuc_0686  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Fisuc_0286  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Fisuc_1919  AAA ATPase [KO:K02341] [EC:2.7.7.7]
Fisuc_0247  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Fisuc_1334  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Fisuc_0745  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Fisuc_1153  DnaB helicase domain protein [KO:K02314] [EC:5.6.2.3]
Fisuc_0525  DNA primase [KO:K02316] [EC:2.7.7.101]
Fisuc_0442  zinc finger CHC2-family protein [KO:K02316] [EC:2.7.7.101]
Fisuc_0292  zinc finger CHC2-family protein [KO:K02316] [EC:2.7.7.101]
Fisuc_2962  single-strand binding protein [KO:K03111]
Fisuc_2707  Ribonuclease H [KO:K03470] [EC:3.1.26.4]
Fisuc_0127  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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