KEGG   PATHWAY: keb03030
Entry
keb03030                    Pathway                                
Name
DNA replication - Kroppenstedtia eburnea
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
keb03030  DNA replication
keb03030

Organism
Kroppenstedtia eburnea [GN:keb]
Gene
GXN75_06075  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
GXN75_09645  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
GXN75_00480  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
GXN75_00540  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
GXN75_12575  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
GXN75_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
GXN75_17245  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
GXN75_12280  DNA primase [KO:K02316] [EC:2.7.7.101]
GXN75_17275  ssb; single-stranded DNA-binding protein [KO:K03111]
GXN75_05685  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
GXN75_10455  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
GXN75_06425  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
GXN75_02600  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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