KEGG   PATHWAY: kpi03430
Entry
kpi03430                    Pathway                                
Name
Mismatch repair - Klebsiella pneumoniae CG43
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
kpi03430  Mismatch repair
kpi03430

Other DBs
GO: 0006298
Organism
Klebsiella pneumoniae CG43 [GN:kpi]
Gene
D364_15775  DNA mismatch repair protein MutS [KO:K03555]
D364_23230  DNA mismatch repair protein [KO:K03572]
D364_16445  DNA mismatch repair protein [KO:K03573]
D364_21970  uvrD; DNA-dependent helicase [KO:K03657] [EC:5.6.2.4]
D364_12595  sbcB; exonuclease I [KO:K01141] [EC:3.1.11.1]
D364_14450  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
D364_01910  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
D364_12000  exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
D364_17095  ssDNA exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
D364_22640  single-stranded DNA-binding protein [KO:K03111]
D364_14525  single-stranded DNA-binding protein [KO:K03111]
D364_00950  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
D364_20980  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
D364_02310  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
D364_03525  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
D364_05695  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
D364_01120  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
D364_11995  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
D364_23750  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
D364_24635  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
D364_14050  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
D364_20415  DNA ligase [KO:K01972] [EC:6.5.1.2]
D364_07585  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
D364_19230  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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