KEGG   PATHWAY: lamb03430
Entry
lamb03430                   Pathway                                
Name
Mismatch repair - Luteolibacter ambystomatis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lamb03430  Mismatch repair
lamb03430

Other DBs
GO: 0006298
Organism
Luteolibacter ambystomatis [GN:lamb]
Gene
KBB96_19915  mutS; DNA mismatch repair protein MutS [KO:K03555]
KBB96_04530  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
KBB96_11645  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
KBB96_14395  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
KBB96_13810  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
KBB96_19565  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
KBB96_15120  single-stranded DNA-binding protein [KO:K03111]
KBB96_16310  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KBB96_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KBB96_07295  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
KBB96_16950  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KBB96_11845  hypothetical protein [KO:K02341] [EC:2.7.7.7]
KBB96_11495  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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