KEGG   PATHWAY: lba03030
Entry
lba03030                    Pathway                                
Name
DNA replication - Leptotrichia buccalis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lba03030  DNA replication
lba03030

Organism
Leptotrichia buccalis [GN:lba]
Gene
Lebu_1206  Exonuclease RNase T and DNA polymerase III [KO:K02342] [EC:2.7.7.7]
Lebu_0463  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Lebu_0497  DNA polymerase III, alpha subunit [KO:K03763] [EC:2.7.7.7]
Lebu_2053  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Lebu_2064  ATPase and helicase subunits involved in DNA replication [KO:K02341] [EC:2.7.7.7]
Lebu_1817  DNA polymerase III delta [KO:K02340] [EC:2.7.7.7]
Lebu_1267  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Lebu_2055  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Lebu_1887  DNA primase [KO:K02316] [EC:2.7.7.101]
Lebu_0211  single-strand binding protein [KO:K03111]
Lebu_1400  Ribonuclease H [KO:K03470] [EC:3.1.26.4]
Lebu_1168  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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