KEGG   PATHWAY: leg03410
Entry
leg03410                    Pathway                                
Name
Base excision repair - Leptospirillum sp. Group II
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
leg03410  Base excision repair
leg03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Leptospirillum sp. Group II [GN:leg]
Gene
ABH19_05980  endonuclease III [KO:K10773] [EC:3.2.2.- 4.2.99.18]
ABH19_09950  DNA lyase [KO:K10773] [EC:3.2.2.- 4.2.99.18]
ABH19_01360  hypothetical protein [KO:K03575] [EC:3.2.2.31]
ABH19_04645  3-methyladenine DNA glycosylase [KO:K03652] [EC:3.2.2.21]
ABH19_03845  adenosine deaminase [KO:K13529] [EC:3.2.2.21]
ABH19_04690  adenosine deaminase [KO:K13529] [EC:3.2.2.21]
ABH19_08340  uracil-DNA glycosylase [KO:K21929] [EC:3.2.2.27]
ABH19_00755  hypothetical protein [KO:K21929] [EC:3.2.2.27]
ABH19_05780  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
ABH19_07610  single-stranded DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
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