KEGG   PATHWAY: lri03030
Entry
lri03030                    Pathway                                
Name
DNA replication - Leminorella richardii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lri03030  DNA replication
lri03030

Organism
Leminorella richardii [GN:lri]
Gene
NCTC12151_01620  holE; DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
NCTC12151_01089  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
NCTC12151_00730  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
NCTC12151_01189  dnaX; DNA polymerase III subunit tau [KO:K02343] [EC:2.7.7.7]
NCTC12151_01917  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
NCTC12151_02242  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
NCTC12151_00831  holD; DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
NCTC12151_00822  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
NCTC12151_00002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
NCTC12151_00449  dnaB; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
NCTC12151_02797  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
NCTC12151_00454  ssb; Helix-destabilizing protein [KO:K03111]
NCTC12151_01088  rnhA; Ribonuclease HI [KO:K03469] [EC:3.1.26.4]
NCTC12151_00729  rnhB; Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
NCTC12151_00031  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
NCTC12151_01038  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
NCTC12151_00060  ligB; DNA ligase B [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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