KEGG   PATHWAY: max03030
Entry
max03030                    Pathway                                
Name
DNA replication - Methanomethylophilus alvi
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
max03030  DNA replication
max03030

Organism
Methanomethylophilus alvi [GN:max]
Gene
MMALV_08320  hypothetical protein [KO:K02342] [EC:2.7.7.7]
MMALV_11050  hypothetical protein [KO:K02342] [EC:2.7.7.7]
MMALV_09870  DNA primase [KO:K02316] [EC:2.7.7.101]
MMALV_12310  Phosphoglycerate mutase family [KO:K03469] [EC:3.1.26.4]
MMALV_14320  Ribonuclease RNAseHII [KO:K03470] [EC:3.1.26.4]
MMALV_07160  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
MMALV_15420  DNA polymerase B (DNA Pol B) [KO:K02319] [EC:2.7.7.7]
MMALV_00150  DNA polymerase D small subunit (DPS) [KO:K02323] [EC:2.7.7.7]
MMALV_03540  DNA polymerase D large subunit (DPL) [KO:K02322] [EC:2.7.7.7]
MMALV_16800  Minichromosome maintenance (MCM) protein [KO:K10726] [EC:5.6.2.3]
MMALV_16880  Primase small subunit (PriS) [KO:K02683] [EC:2.7.7.102]
MMALV_00630  Primase large subunit (PriL) [KO:K18882]
MMALV_01790  Proliferating Cell Nuclear Antigen PCNA [KO:K04802]
MMALV_10430  Replication factor C small subunit [KO:K04801]
MMALV_08210  Replication factor C large subunit [KO:K04800]
MMALV_04650  flap structure-specific endonuclease FEN-1 [KO:K04799] [EC:3.1.-.-]
MMALV_11800  ATP-dependent DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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