KEGG   PATHWAY: mbk03030
Entry
mbk03030                    Pathway                                
Name
DNA replication - Mycobacterium tuberculosis variant bovis BCG Korea 1168P
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mbk03030  DNA replication
mbk03030

Organism
Mycobacterium tuberculosis variant bovis BCG Korea 1168P [GN:mbk]
Gene
K60_038510  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
K60_022730  hypothetical protein [KO:K02342] [EC:2.7.7.7]
K60_016470  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
K60_038610  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
K60_037770  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
K60_025030  hypothetical protein [KO:K02340] [EC:2.7.7.7]
K60_000020  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
K60_000620  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
K60_024380  DNA primase [KO:K02316] [EC:2.7.7.101]
K60_000580  single-stranded DNA-binding protein [KO:K03111]
K60_025740  hypothetical protein [KO:K03111]
K60_023120  bifunctional RNase H/acid phosphatase [KO:K22316] [EC:3.1.26.4 3.1.3.73]
K60_030050  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
K60_017120  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
K60_031250  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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