KEGG   PATHWAY: msm03430
Entry
msm03430                    Pathway                                
Name
Mismatch repair - Mycolicibacterium smegmatis MC2 155
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
msm03430  Mismatch repair
msm03430

Other DBs
GO: 0006298
Organism
Mycolicibacterium smegmatis MC2 155 [GN:msm]
Gene
MSMEG_5534  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
MSMEG_1952  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
MSMEG_1943  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
MSMEG_5226  xseA; exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
MSMEG_5227  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
MSMEG_4701  single-strand binding protein [KO:K03111]
MSMEG_6896  single-stranded DNA-binding protein [KO:K03111]
MSMEG_3178  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
MSMEG_0001  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
MSMEG_6285  DNA polymerase III gamma/tau subunit [KO:K02343] [EC:2.7.7.7]
MSMEG_4572  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
MSMEG_6153  DNA polymerase III subunit delta [KO:K02341] [EC:2.7.7.7]
MSMEG_4259  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
MSMEG_6275  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
MSMEG_2362  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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