KEGG   PATHWAY: myd03030
Entry
myd03030                    Pathway                                
Name
DNA replication - Myotis davidii (David's myotis)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
myd03030  DNA replication
myd03030

Organism
Myotis davidii (David's myotis) [GN:myd]
Gene
102771034  SSBP1; single stranded DNA binding protein 1 [KO:K03111]
102775519  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
102762180  RPA1; replication protein A1 [KO:K07466]
102771035  PCNA; proliferating cell nuclear antigen [KO:K04802]
102761584  DNA2; DNA replication helicase/nuclease 2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
102762852  FEN1; flap structure-specific endonuclease 1 [KO:K04799] [EC:3.1.-.-]
102763533  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
102772701  POLA1; DNA polymerase alpha 1, catalytic subunit [KO:K02320] [EC:2.7.7.7]
102765050  POLA2; DNA polymerase alpha 2, accessory subunit [KO:K02321]
102752743  PRIM1; primase (DNA) subunit 1 [KO:K02684] [EC:2.7.7.102]
107182006  DNA primase large subunit-like [KO:K02685]
102772389  POLD1; DNA polymerase delta 1, catalytic subunit [KO:K02327] [EC:2.7.7.7]
102752198  POLD2; DNA polymerase delta 2, accessory subunit [KO:K02328]
102758635  POLD3; DNA polymerase delta 3, accessory subunit [KO:K03504]
102767806  POLD4; DNA polymerase delta 4, accessory subunit [KO:K03505]
102754827  POLE; DNA polymerase epsilon, catalytic subunit [KO:K02324] [EC:2.7.7.7]
102754967  POLE2; DNA polymerase epsilon 2, accessory subunit [KO:K02325] [EC:2.7.7.7]
102771370  POLE3; DNA polymerase epsilon 3, accessory subunit [KO:K02326] [EC:2.7.7.7]
102767991  POLE4; DNA polymerase epsilon 4, accessory subunit [KO:K03506] [EC:2.7.7.7]
102772302  MCM2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
102757714  MCM3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
102774510  MCM4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
102765886  MCM5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
102761506  MCM6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
102773727  MCM7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
102774538  RPA2; replication protein A2 [KO:K10739]
102754474  RPA4; replication protein A4 [KO:K10741]
102755072  RPA3; replication protein A3 [KO:K10740]
102773039  RFC1; replication factor C subunit 1 [KO:K10754]
102758777  RFC2; replication factor C subunit 2 [KO:K10755]
102752958  RFC4; replication factor C subunit 4 [KO:K10755]
102764683  RFC5; replication factor C subunit 5 [KO:K10756]
102760177  RFC3; replication factor C subunit 3 [KO:K10756]
102751437  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
102758923  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
102761624  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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