KEGG   PATHWAY: nle04710
Entry
nle04710                    Pathway                                
Name
Circadian rhythm - Nomascus leucogenys (northern white-cheeked gibbon)
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
Class
Organismal Systems; Environmental adaptation
Pathway map
nle04710  Circadian rhythm
nle04710

Other DBs
GO: 0007623
Organism
Nomascus leucogenys (northern white-cheeked gibbon) [GN:nle]
Gene
100587959  RORA; nuclear receptor ROR-alpha isoform X1 [KO:K08532]
100586162  RORB; nuclear receptor ROR-beta [KO:K08533]
100599319  RORC; nuclear receptor ROR-gamma isoform X1 [KO:K08534]
100602478  NR1D1; nuclear receptor subfamily 1 group D member 1 [KO:K03728]
100594763  NR1D2; nuclear receptor subfamily 1 group D member 2 [KO:K08531]
100587135  NFIL3; nuclear factor interleukin-3-regulated protein [KO:K09059]
100601785  ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1 [KO:K02296]
100588181  DBP; D site-binding protein [KO:K09056]
100588063  BHLHE40; class E basic helix-loop-helix protein 40 [KO:K03729]
100607687  class E basic helix-loop-helix protein 40-like [KO:K03729]
100585725  BHLHE41; class E basic helix-loop-helix protein 41 [KO:K03730]
100604834  CSNK1D; casein kinase I isoform X1 [KO:K08959] [EC:2.7.11.1]
100607246  casein kinase I isoform X1 [KO:K08960] [EC:2.7.11.1]
100587095  PER1; period circadian protein homolog 1 isoform X1 [KO:K21944]
100596712  PER2; period circadian protein homolog 2 isoform X2 [KO:K02633]
100586094  PER3; period circadian protein homolog 3 isoform X1 [KO:K21945]
100582392  CRY1; cryptochrome-1 [KO:K02295]
100579417  CRY2; cryptochrome-2 isoform X1 [KO:K02295]
100606130  CLOCK; circadian locomoter output cycles protein kaput isoform X1 [KO:K02223] [EC:2.3.1.48]
100580772  NPAS2; neuronal PAS domain-containing protein 2 isoform X1 [KO:K09026]
100586647  CREB1; cyclic AMP-responsive element-binding protein 1 isoform X2 [KO:K05870]
100582042  PRKAA2; 5'-AMP-activated protein kinase catalytic subunit alpha-2 isoform X1 [KO:K07198] [EC:2.7.11.31]
100595096  PRKAA1; 5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1 [KO:K07198] [EC:2.7.11.31]
100600676  PRKAB1; 5'-AMP-activated protein kinase subunit beta-1 [KO:K07199]
100597131  PRKAB2; 5'-AMP-activated protein kinase subunit beta-2 [KO:K07199]
100598921  PRKAG2; 5'-AMP-activated protein kinase subunit gamma-2 isoform X3 [KO:K07200]
100607037  PRKAG1; 5'-AMP-activated protein kinase subunit gamma-1 [KO:K07200]
100606474  PRKAG3; 5'-AMP-activated protein kinase subunit gamma-3 [KO:K07200]
100596079  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
100580180  CUL1; cullin-1 isoform X1 [KO:K03347]
100596865  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100605260  FBXW11; F-box/WD repeat-containing protein 11 isoform X7 [KO:K03362]
100583099  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
100579601  FBXL21P; putative F-box/LRR-repeat protein 21 [KO:K10287]
100580993  FBXL3; F-box/LRR-repeat protein 3 [KO:K10269]
Compound
C00076  Calcium cation
C00575  3',5'-Cyclic AMP
Reference
  Authors
Takahashi JS
  Title
Transcriptional architecture of the mammalian circadian clock.
  Journal
Nat Rev Genet 18:164-179 (2017)
DOI:10.1038/nrg.2016.150
Reference
  Authors
Wang S, Li F, Lin Y, Wu B
  Title
Targeting REV-ERBalpha for therapeutic purposes: promises and challenges.
  Journal
Theranostics 10:4168-4182 (2020)
DOI:10.7150/thno.43834
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K.
  Title
Dec1 and Dec2 are regulators of the mammalian molecular clock.
  Journal
Nature 419:841-4 (2002)
DOI:10.1038/nature01123
Reference
  Authors
Fu L, Lee CC.
  Title
The circadian clock: pacemaker and tumour suppressor.
  Journal
Nat Rev Cancer 3:350-61 (2003)
DOI:10.1038/nrc1072
Reference
  Authors
Schibler U, Sassone-Corsi P.
  Title
A web of circadian pacemakers.
  Journal
Cell 111:919-22 (2002)
DOI:10.1016/S0092-8674(02)01225-4
Reference
  Authors
Takahashi JS, Hong HK, Ko CH, McDearmon EL
  Title
The genetics of mammalian circadian order and disorder: implications for physiology and disease.
  Journal
Nat Rev Genet 9:764-75 (2008)
DOI:10.1038/nrg2430
Related
pathway
nle04010  MAPK signaling pathway
nle04120  Ubiquitin mediated proteolysis
nle04713  Circadian entrainment
KO pathway
ko04710   
LinkDB

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