KEGG   PATHWAY: nmar02010
Entry
nmar02010                   Pathway                                
Name
ABC transporters - Nocardioides marmotae
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
nmar02010  ABC transporters
nmar02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Nocardioides marmotae [GN:nmar]
Gene
HPC71_02250  sulfate ABC transporter substrate-binding protein [KO:K23163]
HPC71_02255  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
HPC71_02260  sulfate ABC transporter permease [KO:K02047]
HPC71_02265  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
HPC71_01565  ABC transporter substrate-binding protein [KO:K15553]
HPC71_11905  ABC transporter substrate-binding protein [KO:K15553]
HPC71_11895  ABC transporter permease [KO:K15554]
HPC71_11900  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HPC71_03375  ABC transporter substrate-binding protein [KO:K15598]
HPC71_04835  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
HPC71_04830  modB; molybdate ABC transporter permease subunit [KO:K02018]
HPC71_04825  ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
HPC71_01695  thiamine ABC transporter substrate-binding protein [KO:K02064]
HPC71_01700  iron ABC transporter permease [KO:K02063]
HPC71_01705  ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
HPC71_07270  spermidine/putrescine ABC transporter substrate-binding protein [KO:K11069]
HPC71_07285  ABC transporter permease [KO:K11070]
HPC71_07280  ABC transporter permease [KO:K11071]
HPC71_07275  ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
HPC71_01805  ABC transporter substrate-binding protein [KO:K05845]
HPC71_01795  ABC transporter permease [KO:K05846]
HPC71_01800  ABC transporter permease subunit [KO:K05846]
HPC71_01790  ATP-binding cassette domain-containing protein [KO:K05847] [EC:7.6.2.9]
HPC71_04785  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
HPC71_04805  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
HPC71_19660  extracellular solute-binding protein [KO:K10117]
HPC71_19655  sugar ABC transporter permease [KO:K10118]
HPC71_19650  carbohydrate ABC transporter permease [KO:K10119]
HPC71_04695  carbohydrate ABC transporter substrate-binding protein [KO:K10232]
HPC71_04700  sugar ABC transporter permease [KO:K10233]
HPC71_04705  carbohydrate ABC transporter permease [KO:K10234]
HPC71_04800  extracellular solute-binding protein [KO:K10236]
HPC71_04795  sugar ABC transporter permease [KO:K10237]
HPC71_04790  carbohydrate ABC transporter permease [KO:K10238]
HPC71_02890  MCE family protein [KO:K02067]
HPC71_02895  MCE family protein [KO:K02067]
HPC71_02900  MCE family protein [KO:K02067]
HPC71_02905  MCE family protein [KO:K02067]
HPC71_02910  MCE family protein [KO:K02067]
HPC71_02915  MCE family protein [KO:K02067]
HPC71_09055  MCE family protein [KO:K02067]
HPC71_09060  MCE family protein [KO:K02067]
HPC71_09065  MCE family protein [KO:K02067]
HPC71_09070  MCE family protein [KO:K02067]
HPC71_09075  MCE family protein [KO:K02067]
HPC71_09080  MCE family protein [KO:K02067]
HPC71_09165  MCE family protein [KO:K02067]
HPC71_09170  MCE family protein [KO:K02067]
HPC71_09175  MCE family protein [KO:K02067]
HPC71_09180  MCE family protein [KO:K02067]
HPC71_09185  MCE family protein [KO:K02067]
HPC71_09190  MCE family protein [KO:K02067]
HPC71_02880  ABC transporter permease [KO:K02066]
HPC71_02885  ABC transporter permease [KO:K02066]
HPC71_09045  ABC transporter permease [KO:K02066]
HPC71_09050  ABC transporter permease [KO:K02066]
HPC71_09155  ABC transporter permease [KO:K02066]
HPC71_09160  ABC transporter permease [KO:K02066]
HPC71_02875  ABC transporter ATP-binding protein [KO:K02065]
HPC71_03410  BMP family protein [KO:K07335]
HPC71_16745  BMP family ABC transporter substrate-binding protein [KO:K07335]
HPC71_18210  BMP family protein [KO:K07335]
HPC71_03420  ABC transporter permease [KO:K23535]
HPC71_16735  ABC transporter permease [KO:K23535]
HPC71_18200  ABC transporter permease [KO:K23535]
HPC71_03425  ABC transporter permease [KO:K23536]
HPC71_16730  ABC transporter permease [KO:K23536]
HPC71_18195  ABC transporter permease [KO:K23536]
HPC71_03415  ABC transporter ATP-binding protein [KO:K23537]
HPC71_16740  ABC transporter ATP-binding protein [KO:K23537]
HPC71_18205  ABC transporter ATP-binding protein [KO:K23537]
HPC71_02695  sugar ABC transporter substrate-binding protein [KO:K10439]
HPC71_03665  substrate-binding domain-containing protein [KO:K10439]
HPC71_13555  sugar ABC transporter substrate-binding protein [KO:K10439]
HPC71_02705  ABC transporter permease [KO:K10440]
HPC71_03660  ABC transporter permease [KO:K10440]
HPC71_13545  ABC transporter permease [KO:K10440]
HPC71_02700  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
HPC71_03655  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
HPC71_13550  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
HPC71_01520  substrate-binding domain-containing protein [KO:K10543]
HPC71_01530  ABC transporter permease [KO:K10544]
HPC71_01525  sugar ABC transporter ATP-binding protein [KO:K10545] [EC:7.5.2.10]
HPC71_05700  phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
HPC71_05705  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
HPC71_05710  pstA; phosphate ABC transporter permease PstA [KO:K02038]
HPC71_05715  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
HPC71_16690  putative selenate ABC transporter substrate-binding protein [KO:K02044]
HPC71_16680  ABC transporter permease subunit [KO:K02042]
HPC71_16685  ATP-binding cassette domain-containing protein [KO:K02041] [EC:7.3.2.2]
HPC71_03535  glutamate ABC transporter substrate-binding protein [KO:K10005]
HPC71_03530  amino acid ABC transporter permease [KO:K10006]
HPC71_03525  amino acid ABC transporter permease [KO:K10007]
HPC71_03540  amino acid ABC transporter ATP-binding protein [KO:K10008] [EC:7.4.2.1]
HPC71_08295  ABC transporter substrate-binding protein [KO:K01999]
HPC71_13655  ABC transporter substrate-binding protein [KO:K01999]
HPC71_17345  ABC transporter substrate-binding protein [KO:K01999]
HPC71_19690  amino acid ABC transporter substrate-binding protein [KO:K01999]
HPC71_08270  branched-chain amino acid ABC transporter permease [KO:K01997]
HPC71_13670  branched-chain amino acid ABC transporter permease [KO:K01997]
HPC71_17335  branched-chain amino acid ABC transporter permease [KO:K01997]
HPC71_18040  ABC transporter permease [KO:K01997 K01998]
HPC71_19685  branched-chain amino acid ABC transporter permease [KO:K01997]
HPC71_08280  branched-chain amino acid ABC transporter permease [KO:K01998]
HPC71_13675  branched-chain amino acid ABC transporter permease [KO:K01998]
HPC71_17340  branched-chain amino acid ABC transporter permease [KO:K01998]
HPC71_19680  branched-chain amino acid ABC transporter ATP-binding protein/permease [KO:K01995 K01998]
HPC71_08285  ABC transporter ATP-binding protein [KO:K01995]
HPC71_13660  ABC transporter ATP-binding protein [KO:K01995]
HPC71_17325  ABC transporter ATP-binding protein [KO:K01995]
HPC71_18035  ABC transporter ATP-binding protein [KO:K01995]
HPC71_08290  ABC transporter ATP-binding protein [KO:K01996]
HPC71_13665  ABC transporter ATP-binding protein [KO:K01996]
HPC71_17330  ABC transporter ATP-binding protein [KO:K01996]
HPC71_18030  ABC transporter ATP-binding protein [KO:K01996]
HPC71_19675  ATP-binding cassette domain-containing protein [KO:K01996]
HPC71_06780  iron-siderophore ABC transporter substrate-binding protein [KO:K25286]
HPC71_13000  iron-siderophore ABC transporter substrate-binding protein [KO:K25286]
HPC71_15205  ABC transporter substrate-binding protein [KO:K25286]
HPC71_06765  iron ABC transporter permease [KO:K23186]
HPC71_13005  iron ABC transporter permease [KO:K23186]
HPC71_15195  iron chelate uptake ABC transporter family permease subunit [KO:K23186]
HPC71_06770  iron chelate uptake ABC transporter family permease subunit [KO:K23187]
HPC71_13010  iron ABC transporter permease [KO:K23187]
HPC71_15190  iron chelate uptake ABC transporter family permease subunit [KO:K23187]
HPC71_13015  ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
HPC71_15185  ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
HPC71_14315  zinc ABC transporter substrate-binding protein [KO:K09815]
HPC71_14325  metal ABC transporter permease [KO:K09816]
HPC71_14320  ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
HPC71_05955  cbiQ; cobalt ECF transporter T component CbiQ [KO:K02008]
HPC71_06840  biotin transporter BioY [KO:K03523]
HPC71_06830  energy-coupling factor transporter transmembrane protein EcfT [KO:K16783]
HPC71_06835  ABC transporter ATP-binding protein [KO:K16784] [EC:7.6.2.-]
HPC71_06635  energy-coupling factor transporter transmembrane protein EcfT [KO:K16785]
HPC71_16220  ABC transporter permease [KO:K09690]
HPC71_16215  ABC transporter ATP-binding protein [KO:K09691] [EC:7.5.2.14]
HPC71_12895  ABC transporter permease [KO:K09694]
HPC71_12900  ABC transporter permease [KO:K09694]
HPC71_12905  ABC transporter ATP-binding protein [KO:K09695]
HPC71_02640  FtsX-like permease family protein [KO:K09813]
HPC71_02645  ABC transporter ATP-binding protein [KO:K09814] [EC:7.6.2.-]
HPC71_13250  ABC transporter ATP-binding protein [KO:K20459]
HPC71_05565  FtsX-like permease family protein [KO:K09811]
HPC71_05560  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
HPC71_12720  cydD; thiol reductant ABC exporter subunit CydD [KO:K16014]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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