KEGG   PATHWAY: nnv03030
Entry
nnv03030                    Pathway                                
Name
DNA replication - Neobacillus novalis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
nnv03030  DNA replication
nnv03030

Organism
Neobacillus novalis [GN:nnv]
Gene
QNH39_05370  exonuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
QNH39_20320  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
QNH39_09705  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
QNH39_00130  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
QNH39_00200  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
QNH39_19310  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
QNH39_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
QNH39_10115  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
QNH39_15250  DnaB-like helicase C-terminal domain-containing protein [KO:K02314] [EC:5.6.2.3]
QNH39_27870  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
QNH39_19140  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
QNH39_27895  ssb; single-stranded DNA-binding protein [KO:K03111]
QNH39_17115  reverse transcriptase-like protein [KO:K03469] [EC:3.1.26.4]
QNH39_17120  reverse transcriptase-like protein [KO:K03469] [EC:3.1.26.4]
QNH39_09620  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
QNH39_20120  rnhC; ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
QNH39_20250  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
QNH39_02410  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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