KEGG   PATHWAY: noo00920
Entry
noo00920                    Pathway                                
Name
Sulfur metabolism - Nocardioides sp. S-1144
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
noo00920  Sulfur metabolism
noo00920

Other DBs
GO: 0006790
Organism
Nocardioides sp. S-1144 [GN:noo]
Gene
FE634_03840  sulfate ABC transporter substrate-binding protein [KO:K23163]
FE634_03845  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
FE634_03850  sulfate ABC transporter permease [KO:K02047]
FE634_03855  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
FE634_13220  glycine/betaine ABC transporter substrate-binding protein [KO:K15551]
FE634_13215  ABC transporter permease [KO:K15552]
FE634_13225  ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
FE634_01150  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
FE634_01155  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
FE634_15585  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
FE634_15580  NAD(P)H-dependent oxidoreductase [KO:K00299] [EC:1.5.1.38]
FE634_10180  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
FE634_18145  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
FE634_18140  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
FE634_18125  cysC; adenylyl-sulfate kinase [KO:K00958] [EC:2.7.7.4]
FE634_15315  3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
FE634_12740  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
FE634_12735  nitrite/sulfite reductase [KO:K00392] [EC:1.8.7.1]
FE634_16225  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
FE634_18185  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
FE634_00315  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
FE634_05865  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
FE634_14915  PLP-dependent transferase [KO:K01739] [EC:2.5.1.48]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
noo00260  Glycine, serine and threonine metabolism
noo00270  Cysteine and methionine metabolism
noo00680  Methane metabolism
noo00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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