KEGG   PATHWAY: nps02010
Entry
nps02010                    Pathway                                
Name
ABC transporters - Nocardioides panacis
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
nps02010  ABC transporters
nps02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Nocardioides panacis [GN:nps]
Gene
KRR39_16730  sulfate ABC transporter substrate-binding protein [KO:K23163]
KRR39_16725  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
KRR39_16720  sulfate ABC transporter permease subunit [KO:K02047]
KRR39_16715  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
KRR39_10290  ABC transporter substrate-binding protein [KO:K15551]
KRR39_10280  ABC transporter permease [KO:K15552]
KRR39_12870  ABC transporter substrate-binding protein [KO:K15553]
KRR39_12880  ABC transporter permease [KO:K15554]
KRR39_12875  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
KRR39_00745  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
KRR39_00740  ABC transporter permease [KO:K02018]
KRR39_00735  ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
KRR39_10695  extracellular solute-binding protein [KO:K02012]
KRR39_10680  iron ABC transporter permease [KO:K02011]
KRR39_17575  thiamine ABC transporter substrate-binding protein [KO:K02064]
KRR39_17570  iron ABC transporter permease [KO:K02063]
KRR39_17565  ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
KRR39_04585  spermidine/putrescine ABC transporter substrate-binding protein [KO:K11069]
KRR39_04600  ABC transporter permease [KO:K11070]
KRR39_04595  ABC transporter permease [KO:K11071]
KRR39_04590  ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
KRR39_10675  ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
KRR39_11615  ABC transporter substrate-binding protein [KO:K02002]
KRR39_11620  ABC transporter permease subunit [KO:K02001]
KRR39_11625  glycine betaine/L-proline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
KRR39_00265  ABC transporter substrate-binding protein [KO:K05845]
KRR39_11220  glycine betaine ABC transporter substrate-binding protein [KO:K05845]
KRR39_00270  ABC transporter permease [KO:K05846]
KRR39_00275  ABC transporter permease [KO:K05846]
KRR39_11205  ABC transporter permease [KO:K05846]
KRR39_11215  ABC transporter permease [KO:K05846]
KRR39_00280  ATP-binding cassette domain-containing protein [KO:K05847] [EC:7.6.2.9]
KRR39_00705  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
KRR39_21410  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
KRR39_01820  carbohydrate ABC transporter permease [KO:K10119]
KRR39_19150  sugar ABC transporter substrate-binding protein [KO:K10227]
KRR39_19155  sugar ABC transporter permease [KO:K10228]
KRR39_19160  carbohydrate ABC transporter permease [KO:K10229]
KRR39_21395  extracellular solute-binding protein [KO:K10236]
KRR39_00645  sugar ABC transporter permease [KO:K10237]
KRR39_10540  sugar ABC transporter permease [KO:K10237]
KRR39_21400  sugar ABC transporter permease [KO:K10237]
KRR39_00650  carbohydrate ABC transporter permease [KO:K10238]
KRR39_15315  carbohydrate ABC transporter permease [KO:K10238]
KRR39_21405  carbohydrate ABC transporter permease [KO:K10238]
KRR39_06580  sugar ABC transporter substrate-binding protein [KO:K17329]
KRR39_06585  sugar ABC transporter permease [KO:K17330]
KRR39_06590  carbohydrate ABC transporter permease [KO:K17331]
KRR39_01815  sugar ABC transporter permease [KO:K17245]
KRR39_19010  sugar-binding protein [KO:K10546]
KRR39_19000  sugar ABC transporter permease [KO:K10547]
KRR39_19005  sugar ABC transporter ATP-binding protein [KO:K10548] [EC:7.5.2.-]
KRR39_15970  MCE family protein [KO:K02067]
KRR39_15975  MCE family protein [KO:K02067]
KRR39_15980  MCE family protein [KO:K02067]
KRR39_15985  MCE family protein [KO:K02067]
KRR39_15990  MCE family protein [KO:K02067]
KRR39_15995  MCE family protein [KO:K02067]
KRR39_16005  MCE family protein [KO:K02067]
KRR39_16010  ABC transporter permease [KO:K02066]
KRR39_16015  ABC transporter permease [KO:K02066]
KRR39_16020  ABC transporter ATP-binding protein [KO:K02065]
KRR39_15000  BMP family ABC transporter substrate-binding protein [KO:K07335]
KRR39_14990  ABC transporter permease [KO:K23535]
KRR39_14985  ABC transporter permease [KO:K23536]
KRR39_14995  ABC transporter ATP-binding protein [KO:K23537]
KRR39_18115  substrate-binding domain-containing protein [KO:K10439]
KRR39_22270  substrate-binding domain-containing protein [KO:K10439]
KRR39_18120  ABC transporter permease [KO:K10440]
KRR39_18460  ABC transporter permease [KO:K10440]
KRR39_22265  ABC transporter permease [KO:K10440]
KRR39_18125  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
KRR39_18450  ATP-binding cassette domain-containing protein [KO:K10441] [EC:7.5.2.7]
KRR39_22260  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
KRR39_18455  substrate-binding domain-containing protein [KO:K23508]
KRR39_19085  substrate-binding domain-containing protein [KO:K10543]
KRR39_19090  ATP-binding cassette domain-containing protein [KO:K10545] [EC:7.5.2.10]
KRR39_22490  pstS; phosphate ABC transporter substrate-binding protein PstS [KO:K02040]
KRR39_22485  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
KRR39_22480  pstA; phosphate ABC transporter permease PstA [KO:K02038]
KRR39_22475  pstB; phosphate ABC transporter ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
KRR39_05205  glutamate ABC transporter substrate-binding protein [KO:K10005]
KRR39_05200  amino acid ABC transporter permease [KO:K10006]
KRR39_05195  amino acid ABC transporter permease [KO:K10007]
KRR39_05210  amino acid ABC transporter ATP-binding protein [KO:K10008] [EC:7.4.2.1]
KRR39_11380  ABC transporter substrate-binding protein [KO:K01999]
KRR39_16745  ABC transporter substrate-binding protein [KO:K01999]
KRR39_11360  branched-chain amino acid ABC transporter permease [KO:K01997]
KRR39_16750  branched-chain amino acid ABC transporter permease [KO:K01997]
KRR39_11365  branched-chain amino acid ABC transporter permease [KO:K01998]
KRR39_11375  ABC transporter ATP-binding protein [KO:K01996]
KRR39_05600  substrate-binding domain-containing protein [KO:K11959]
KRR39_10595  substrate-binding protein [KO:K11959]
KRR39_10590  branched-chain amino acid ABC transporter permease [KO:K11960]
KRR39_10585  branched-chain amino acid ABC transporter permease [KO:K11961]
KRR39_10580  ATP-binding cassette domain-containing protein [KO:K11962]
KRR39_10575  ABC transporter ATP-binding protein [KO:K11963]
KRR39_13730  ABC transporter ATP-binding protein [KO:K10823 K15583]
KRR39_16295  iron-siderophore ABC transporter substrate-binding protein [KO:K25286]
KRR39_16290  iron ABC transporter permease [KO:K23186]
KRR39_16280  ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
KRR39_12940  metal ABC transporter substrate-binding protein [KO:K09815]
KRR39_12950  metal ABC transporter permease [KO:K09816]
KRR39_12945  ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
KRR39_13865  energy-coupling factor ABC transporter permease [KO:K02007]
KRR39_13855  cbiQ; cobalt ECF transporter T component CbiQ [KO:K02008]
KRR39_07580  biotin transporter BioY [KO:K03523]
KRR39_07560  energy-coupling factor transporter transmembrane protein EcfT [KO:K16783]
KRR39_07565  energy-coupling factor ABC transporter ATP-binding protein [KO:K16784] [EC:7.6.2.-]
KRR39_12370  energy-coupling factor transporter transmembrane protein EcfT [KO:K16785]
KRR39_14635  ABC transporter permease [KO:K09690]
KRR39_14630  ABC transporter ATP-binding protein [KO:K09691] [EC:7.5.2.14]
KRR39_05080  ABC transporter permease [KO:K09694]
KRR39_05085  ABC transporter permease [KO:K09694]
KRR39_05075  ABC transporter ATP-binding protein [KO:K09695]
KRR39_14265  ftsX; permease-like cell division protein FtsX [KO:K09811]
KRR39_14270  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
KRR39_11485  ABC transporter ATP-binding protein/permease [KO:K18889]
KRR39_23520  ABC transporter ATP-binding protein/permease [KO:K18887]
KRR39_23525  ABC transporter ATP-binding protein/permease [KO:K18888]
KRR39_03855  ATP-binding cassette domain-containing protein [KO:K18230]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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