KEGG   PATHWAY: obb03030
Entry
obb03030                    Pathway                                
Name
DNA replication - Osmia bicornis bicornis (red mason bee)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
obb03030  DNA replication
obb03030

Organism
Osmia bicornis bicornis (red mason bee) [GN:obb]
Gene
114873414  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
114871372  ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
114878731  replication protein A 70 kDa DNA-binding subunit [KO:K07466]
114874903  proliferating cell nuclear antigen [KO:K04802]
114872229  DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
114875269  flap endonuclease 1 isoform X1 [KO:K04799] [EC:3.1.-.-]
114879118  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
114874622  DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
114877379  DNA polymerase alpha subunit B [KO:K02321]
114874377  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
114874785  DNA primase large subunit-like [KO:K02685]
114876817  DNA primase large subunit-like [KO:K02685]
114878408  DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
114871146  DNA polymerase delta small subunit-like isoform X1 [KO:K02328]
114878630  DNA polymerase delta small subunit-like isoform X1 [KO:K02328]
114871176  DNA polymerase delta subunit 3-like [KO:K03504]
114880355  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
114873006  DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
114878666  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
114874069  DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
114876737  DNA replication licensing factor Mcm2 [KO:K02540] [EC:5.6.2.3]
114880405  DNA replication licensing factor Mcm3 [KO:K02541] [EC:5.6.2.3]
114873398  DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
114872979  DNA replication licensing factor Mcm5 [KO:K02209] [EC:5.6.2.3]
114879022  DNA replication licensing factor Mcm6 [KO:K02542] [EC:5.6.2.3]
114875643  DNA replication licensing factor Mcm7 [KO:K02210] [EC:5.6.2.3]
114876143  replication protein A 32 kDa subunit-like [KO:K10739]
114876145  replication protein A 32 kDa subunit-like [KO:K10739]
114877771  replication protein A 14 kDa subunit-like [KO:K10740]
114874104  replication factor C subunit 1 isoform X1 [KO:K10754]
114870867  replication factor C subunit 2 [KO:K10755]
114872404  replication factor C subunit 4 [KO:K10755]
114878827  replication factor C subunit 5 isoform X1 [KO:K10756]
114877264  replication factor C subunit 3 [KO:K10756]
114880253  ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
114875626  ribonuclease H2 subunit B [KO:K10744]
114870922  ribonuclease H2 subunit C isoform X1 [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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