Entry Name ABC transporters - Oceanimonas sp. GK1
Description The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class Environmental Information Processing; Membrane transportBRITE hierarchy
Pathway map Ortholog table Other DBs Organism Oceanimonas sp. GK1 [GN:
oce ]
Gene GU3_01800 cysW; sulfate/thiosulfate transporter permease subunit [KO:K02047 ]
GU3_07400 molybdenum ABC transporter substrate binding periplasmic protein (ModA) [KO:K02020 ]
GU3_10905 putative molybdenum transport ATP-binding protein ModF [KO:K05776 ]
GU3_01355 2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K02012 ]
GU3_10200 potC; spermidine/putrescine ABC transporter membrane protein [KO:K11070 ]
GU3_10205 potB; spermidine/putrescine ABC transporter membrane protein [KO:K11071 ]
GU3_11995 putrescine transporter subunit: periplasmic-binding component of ABC superfamily [KO:K11073 ]
GU3_11980 putrescine transporter subunit: membrane component of ABC superfamily [KO:K11074 ]
GU3_11985 putrescine transporter subunit: membrane component of ABC superfamily [KO:K11075 ]
GU3_00375 putative ABC-type proline/glycine betaine transport system periplasmic component [KO:K05845 ]
GU3_00390 binding-protein-dependent transport system inner membrane protein [KO:K05846 ]
GU3_13080 phosphate ABC transporter, inner membrane subunit PstA [KO:K02038 ]
GU3_05000 phosphonate ABC transporter, periplasmic phosphonate-binding protein [KO:K02044 ]
GU3_05010 binding-protein-dependent transport systems inner membrane component [KO:K02042 ]
GU3_15245 arginine ABC transporter periplasmic arginine-binding protein ArtI [KO:K09997 ]
GU3_01950 polar amino acid ABC transporter periplasmic binding protein [KO:K16961 ]
GU3_01955 ABC polar amino acid transporter inner membrane protein [KO:K16962 ]
GU3_13705 putative amino acid ABC transporter, periplasmic amino acid-binding protein [KO:K10022 ]
GU3_13695 histidine/lysine/arginine/ornithine ABC transporter permease [KO:K10023 ]
GU3_03260 leucine ABC transporter subunit substrate-binding protein LivK [KO:K01999 ]
GU3_03270 livM; leucine/isoleucine/valine transporter permease subunit [KO:K01998 ]
GU3_03275 livG; leucine/isoleucine/valine transporter ATP-binding subunit [KO:K01995 ]
GU3_03930 metQ; DL-methionine transporter substrate-binding subunit [KO:K02073 ]
GU3_03935 putative ABC-type metal ion transport system,permease component [KO:K02072 ]
GU3_08480 ABC-type oligopeptide transporter, periplasmic binding protein [KO:K15580 ]
GU3_08500 oligopeptide ABC transporter ATP-binding protein OppF [KO:K10823 ]
GU3_07585 peptide ABC transporter, periplasmic peptide-binding protein SapA [KO:K19226 ]
GU3_03955 oligopeptide ABC transporter periplasmic binding protein [KO:K13893 ]
GU3_03950 ABC-type oligopeptide transport system, permease protein [KO:K13895 ]
GU3_05095 zinc ABC transporter, periplasmic zinc-binding protein [KO:K09815 ]
GU3_09220 lipoprotein-releasing system transmembrane protein LolC [KO:K09808 ]
GU3_09230 lipoprotein releasing system, transmembrane protein LolE [KO:K09808 ]
GU3_09225 lipoprotein releasing system, ATP-binding protein [KO:K09810 ] [EC:7.6.2.-]
GU3_01570 Fe-S cluster assembly ABC transporter permease/ATPase [KO:K24821 ]
GU3_11340 putative ABC-type multidrug transport system, ATPase and permease component [KO:K18893 ]
Compound C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference Authors Tomii K, Kanehisa M.
Title A comparative analysis of ABC transporters in complete microbial genomes.
Journal Reference Authors Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal Reference Authors Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal Reference Authors Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal Reference Authors Quintero MJ, Montesinos ML, Herrero A, Flores E
Title Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal Reference Authors Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal Reference Authors Valladares A, Montesinos ML, Herrero A, Flores E.
Title An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal Reference Authors Richard-Fogal CL, Frawley ER, Kranz RG
Title Topology and function of CcmD in cytochrome c maturation.
Journal Reference Authors Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal Reference Authors Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal Reference Authors Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal Reference Authors Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal KO pathway LinkDB All DBs
