KEGG   PATHWAY: panr03030
Entry
panr03030                   Pathway                                
Name
DNA replication - Pseudomonas antarctica
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
panr03030  DNA replication
panr03030

Organism
Pseudomonas antarctica [GN:panr]
Gene
A7J50_5357  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A7J50_5099  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A7J50_2409  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
A7J50_1422  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
A7J50_4272  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
A7J50_4464  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
A7J50_5128  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
A7J50_1061  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
A7J50_0002  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
A7J50_1184  Helicase DnaB [KO:K02314] [EC:5.6.2.3]
A7J50_0522  Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
A7J50_5316  DNA primase [KO:K02316] [EC:2.7.7.101]
A7J50_5220  Single-stranded DNA-binding protein [KO:K03111]
A7J50_2407  Ribonuclease H [KO:K03469] [EC:3.1.26.4]
A7J50_1421  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
A7J50_0082  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
A7J50_5437  NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
A7J50_4283  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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