KEGG   PATHWAY: pcj02010
Entry
pcj02010                    Pathway                                
Name
ABC transporters - Paraburkholderia caledonica
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
pcj02010  ABC transporters
pcj02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Paraburkholderia caledonica [GN:pcj]
Gene
CUJ87_00245  [KO:K10013]
CUJ87_00670  [KO:K23509]
CUJ87_00675  [KO:K23509]
CUJ87_00680  [KO:K10820] [EC:7.5.2.9]
CUJ87_00685  [KO:K23508]
CUJ87_00745  [KO:K01999]
CUJ87_00985  [KO:K02048]
CUJ87_01075  [KO:K12368]
CUJ87_01150  [KO:K01999]
CUJ87_01190  [KO:K02066]
CUJ87_01195  [KO:K02065]
CUJ87_01200  [KO:K02067]
CUJ87_01495  [KO:K02073]
CUJ87_01660  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
CUJ87_02990  [KO:K01999]
CUJ87_03270  [KO:K09690]
CUJ87_03275  [KO:K09691] [EC:7.5.2.14]
CUJ87_03720  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
CUJ87_03725  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
CUJ87_03730  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
CUJ87_03735  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
CUJ87_03740  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
CUJ87_03800  [KO:K10441] [EC:7.5.2.7]
CUJ87_03805  [KO:K10440]
CUJ87_03810  [KO:K10439]
CUJ87_03840  [KO:K01999]
CUJ87_03890  lptF; LPS export ABC transporter permease LptF [KO:K07091]
CUJ87_04115  [KO:K17315]
CUJ87_04120  [KO:K17316]
CUJ87_04125  [KO:K17317]
CUJ87_04130  [KO:K10112] [EC:7.5.2.-]
CUJ87_04425  [KO:K10015]
CUJ87_04430  [KO:K10016]
CUJ87_04435  [KO:K10014]
CUJ87_04855  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
CUJ87_05170  [KO:K02424]
CUJ87_05175  [KO:K10009]
CUJ87_05180  [KO:K10010] [EC:7.4.2.1]
CUJ87_05370  [KO:K10441] [EC:7.5.2.7]
CUJ87_05375  [KO:K10440]
CUJ87_05380  [KO:K10439]
CUJ87_05410  [KO:K07335]
CUJ87_05690  [KO:K09808]
CUJ87_05695  lolD; lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
CUJ87_06055  [KO:K13893]
CUJ87_06060  [KO:K13894]
CUJ87_06065  [KO:K13895]
CUJ87_06070  [KO:K13896]
CUJ87_06960  [KO:K10009]
CUJ87_06965  [KO:K02424]
CUJ87_07050  [KO:K15554]
CUJ87_07055  [KO:K15555] [EC:7.6.2.14]
CUJ87_07115  [KO:K09694]
CUJ87_07120  nodI; nodulation factor ABC transporter ATP-binding protein NodI [KO:K09695]
CUJ87_07145  [KO:K23163]
CUJ87_07150  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
CUJ87_07155  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CUJ87_07160  [KO:K02045] [EC:7.3.2.3]
CUJ87_07435  [KO:K15553]
CUJ87_07440  [KO:K15555] [EC:7.6.2.14]
CUJ87_07445  [KO:K15554]
CUJ87_08585  [KO:K10441] [EC:7.5.2.7]
CUJ87_08590  [KO:K10440]
CUJ87_08595  [KO:K10439]
CUJ87_08960  [KO:K10440]
CUJ87_08965  [KO:K10441] [EC:7.5.2.7]
CUJ87_08970  [KO:K10439]
CUJ87_09205  [KO:K11074]
CUJ87_09210  [KO:K11075]
CUJ87_09215  [KO:K11076] [EC:7.6.2.16]
CUJ87_09220  [KO:K11073]
CUJ87_09360  [KO:K07335]
CUJ87_09365  [KO:K23536]
CUJ87_09370  [KO:K23535]
CUJ87_09375  [KO:K23537]
CUJ87_09985  [KO:K10013]
CUJ87_10025  [KO:K10017] [EC:7.4.2.1]
CUJ87_10030  [KO:K10015]
CUJ87_10035  [KO:K10016]
CUJ87_10050  [KO:K15553]
CUJ87_10110  [KO:K01999]
CUJ87_10285  [KO:K13896]
CUJ87_10290  [KO:K13895]
CUJ87_10295  [KO:K13894]
CUJ87_10300  [KO:K13893]
CUJ87_10400  [KO:K23228]
CUJ87_10405  [KO:K23227]
CUJ87_10430  [KO:K10829] [EC:7.2.2.16]
CUJ87_10435  [KO:K06160]
CUJ87_10740  [KO:K15553]
CUJ87_11400  [KO:K01999]
CUJ87_11935  [KO:K01996]
CUJ87_11940  [KO:K01995]
CUJ87_11945  [KO:K01998]
CUJ87_12125  [KO:K02036] [EC:7.3.2.1]
CUJ87_12130  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
CUJ87_12135  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
CUJ87_12140  [KO:K02040]
CUJ87_12770  [KO:K02073]
CUJ87_12775  [KO:K02072]
CUJ87_12915  [KO:K13409]
CUJ87_13450  [KO:K13891]
CUJ87_13455  [KO:K13890]
CUJ87_13460  [KO:K13889]
CUJ87_13465  [KO:K13892]
CUJ87_13515  [KO:K01996]
CUJ87_13520  [KO:K01995]
CUJ87_13525  [KO:K01998]
CUJ87_13530  [KO:K01997]
CUJ87_13535  [KO:K01999]
CUJ87_13960  [KO:K10440]
CUJ87_13965  [KO:K10441] [EC:7.5.2.7]
CUJ87_13970  [KO:K10439]
CUJ87_13995  [KO:K10111] [EC:7.5.2.-]
CUJ87_14005  [KO:K10229]
CUJ87_14010  [KO:K10228]
CUJ87_14015  [KO:K10227]
CUJ87_14560  artP; amino acid ABC transporter ATP-binding protein [KO:K10004] [EC:7.4.2.1]
CUJ87_14565  [KO:K10002]
CUJ87_14570  [KO:K10003]
CUJ87_14575  [KO:K10001]
CUJ87_14765  araH; L-arabinose ABC transporter permease AraH [KO:K10538]
CUJ87_14770  araG; L-arabinose ABC transporter ATP-binding protein AraG [KO:K10539] [EC:7.5.2.12]
CUJ87_14775  [KO:K10537]
CUJ87_15305  [KO:K05813]
CUJ87_15310  [KO:K05814]
CUJ87_15315  [KO:K05815]
CUJ87_15320  [KO:K05816] [EC:7.6.2.10]
CUJ87_15590  [KO:K07122]
CUJ87_15595  [KO:K07323]
CUJ87_15605  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
CUJ87_15610  [KO:K02066]
CUJ87_15615  [KO:K02065]
CUJ87_15640  [KO:K02471]
CUJ87_16370  [KO:K12372]
CUJ87_16375  dppD; ABC transporter ATP-binding protein [KO:K12371]
CUJ87_16380  [KO:K12370]
CUJ87_16385  [KO:K12369]
CUJ87_16390  [KO:K12368]
CUJ87_16870  [KO:K01999]
CUJ87_16965  [KO:K01996]
CUJ87_16970  [KO:K01995 K01998]
CUJ87_16975  [KO:K01997]
CUJ87_16980  [KO:K01999]
CUJ87_16985  [KO:K01999]
CUJ87_16990  [KO:K01998]
CUJ87_16995  [KO:K01997]
CUJ87_17000  [KO:K01999]
CUJ87_17005  [KO:K01996]
CUJ87_17010  [KO:K01995]
CUJ87_17225  [KO:K10537]
CUJ87_17230  araG; L-arabinose ABC transporter ATP-binding protein AraG [KO:K10539] [EC:7.5.2.12]
CUJ87_17235  araH; L-arabinose ABC transporter permease AraH [KO:K10538]
CUJ87_17375  [KO:K10823]
CUJ87_17380  oppD; ABC transporter ATP-binding protein [KO:K15583]
CUJ87_17385  [KO:K15582]
CUJ87_17390  oppB; oligopeptide transporter permease [KO:K15581]
CUJ87_17395  [KO:K15580]
CUJ87_17620  [KO:K02002]
CUJ87_17705  [KO:K02073]
CUJ87_17715  [KO:K02071]
CUJ87_17720  [KO:K02072]
CUJ87_17890  [KO:K10554]
CUJ87_17895  [KO:K10553]
CUJ87_17900  [KO:K10552]
CUJ87_17910  [KO:K10111] [EC:7.5.2.-]
CUJ87_18445  [KO:K02020]
CUJ87_18525  [KO:K10439]
CUJ87_18530  [KO:K10440]
CUJ87_18535  [KO:K10441] [EC:7.5.2.7]
CUJ87_19105  phnS; 2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K11081]
CUJ87_19110  phnT; 2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT [KO:K11084]
CUJ87_19115  [KO:K11083]
CUJ87_19120  phnV; 2-aminoethylphosphonate ABC transport system, membrane component PhnV [KO:K11082]
CUJ87_19220  [KO:K23508]
CUJ87_19225  [KO:K10820] [EC:7.5.2.9]
CUJ87_19230  [KO:K23509]
CUJ87_19235  [KO:K23509]
CUJ87_19325  [KO:K10018]
CUJ87_19330  [KO:K10020]
CUJ87_19335  [KO:K10019]
CUJ87_19340  [KO:K10021] [EC:7.4.2.1]
CUJ87_20210  [KO:K02000] [EC:7.6.2.9]
CUJ87_20215  choW; choline ABC transporter permease subunit [KO:K02001]
CUJ87_20225  [KO:K02002]
CUJ87_20350  [KO:K02002]
CUJ87_20370  [KO:K02002]
CUJ87_20545  [KO:K10013]
CUJ87_20685  [KO:K07323]
CUJ87_21170  [KO:K10440]
CUJ87_21175  [KO:K10441] [EC:7.5.2.7]
CUJ87_21180  [KO:K10439]
CUJ87_21215  [KO:K10441] [EC:7.5.2.7]
CUJ87_21220  [KO:K10439]
CUJ87_21225  [KO:K10440]
CUJ87_21340  [KO:K02020]
CUJ87_21460  [KO:K15553]
CUJ87_22375  [KO:K10013]
CUJ87_22400  [KO:K10112] [EC:7.5.2.-]
CUJ87_22405  [KO:K10112] [EC:7.5.2.-]
CUJ87_22840  [KO:K10439]
CUJ87_22845  [KO:K10441] [EC:7.5.2.7]
CUJ87_22850  [KO:K10440]
CUJ87_22855  [KO:K10440]
CUJ87_22865  [KO:K10439]
CUJ87_23030  rhaS; rhamnose ABC transporter substrate-binding protein [KO:K10559]
CUJ87_23035  [KO:K10561]
CUJ87_23040  [KO:K10560]
CUJ87_23045  [KO:K10562] [EC:7.5.2.-]
CUJ87_23145  [KO:K02073]
CUJ87_24105  [KO:K10112] [EC:7.5.2.-]
CUJ87_24110  [KO:K17317]
CUJ87_24115  [KO:K17316]
CUJ87_24120  [KO:K17315]
CUJ87_24950  [KO:K10013]
CUJ87_24960  [KO:K02073]
CUJ87_25190  [KO:K10111] [EC:7.5.2.-]
CUJ87_25320  [KO:K02020]
CUJ87_25400  [KO:K01999]
CUJ87_25420  [KO:K01996]
CUJ87_25425  [KO:K01995]
CUJ87_25430  [KO:K01997 K01998]
CUJ87_26000  [KO:K10439]
CUJ87_26455  [KO:K13893]
CUJ87_26975  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
CUJ87_26980  modB; molybdate ABC transporter permease subunit [KO:K02018]
CUJ87_26985  [KO:K02017] [EC:7.3.2.5]
CUJ87_27285  [KO:K01999]
CUJ87_28100  [KO:K07323]
CUJ87_28335  [KO:K10013]
CUJ87_28805  [KO:K17321]
CUJ87_28815  [KO:K17323]
CUJ87_28820  [KO:K17322]
CUJ87_28825  [KO:K17325]
CUJ87_28830  [KO:K17324]
CUJ87_28905  [KO:K10112] [EC:7.5.2.-]
CUJ87_29065  [KO:K11004]
CUJ87_29145  [KO:K15554]
CUJ87_29150  [KO:K15555] [EC:7.6.2.14]
CUJ87_29155  [KO:K15553]
CUJ87_29265  [KO:K10439]
CUJ87_29535  xylF; D-xylose ABC transporter substrate-binding protein [KO:K10543]
CUJ87_29540  [KO:K10545] [EC:7.5.2.10]
CUJ87_29545  [KO:K10544]
CUJ87_29735  [KO:K01999]
CUJ87_29740  [KO:K01997]
CUJ87_29745  [KO:K01998]
CUJ87_29750  [KO:K01995]
CUJ87_29755  [KO:K01996]
CUJ87_29855  [KO:K15553]
CUJ87_30490  [KO:K15553]
CUJ87_30495  [KO:K15555] [EC:7.6.2.14]
CUJ87_30500  [KO:K15554]
CUJ87_32185  [KO:K01999]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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