KEGG   PATHWAY: pgf03070
Entry
pgf03070                    Pathway                                
Name
Bacterial secretion system - Pseudomonas germanica
Description
Gram-negative bacteria secrete a wide range of proteins whose functions include biogenesis of organelles, such as pilli and flagella, nutrient acquisition, virulence, and efflux of drugs and other toxins. Six distinct secretion systems have been shown to mediate protein export through the inner and outer membranes of Gram-negative bacteria. These pathways are highly conserved throughout the Gram-negative bacterial species. In Gram-positive bacteria, secreted proteins are commonly translocated across the single membrane by the Sec pathway or the two-arginine (Tat) pathway.
Class
Environmental Information Processing; Membrane transport
Pathway map
pgf03070  Bacterial secretion system
pgf03070

Other DBs
GO: 0030253 0015628 0030254 0030255 0046819 0033103 0044098 0043952 0043953
Organism
Pseudomonas germanica [GN:pgf]
Gene
J0G10_03530  TolC family outer membrane protein [KO:K12340]
J0G10_11665  gspD; type II secretion system secretin GspD [KO:K02453]
J0G10_11970  secretin and TonB N-terminal domain-containing protein [KO:K02453]
J0G10_13905  gspD; type II secretion system secretin GspD [KO:K02453]
J0G10_11635  general secretion pathway protein GspC [KO:K02452]
J0G10_13815  general secretion pathway protein GspC [KO:K02452]
J0G10_11675  gspF; type II secretion system inner membrane protein GspF [KO:K02455]
J0G10_11895  type II secretion system F family protein [KO:K02455]
J0G10_13915  gspF; type II secretion system inner membrane protein GspF [KO:K02455]
J0G10_11645  gspG; type II secretion system major pseudopilin GspG [KO:K02456]
J0G10_11900  gspG; type II secretion system major pseudopilin GspG [KO:K02456]
J0G10_11975  type II secretion system protein [KO:K02456]
J0G10_11980  type II secretion system protein [KO:K02456]
J0G10_13885  gspG; type II secretion system major pseudopilin GspG [KO:K02456]
J0G10_11630  gspH; type II secretion system minor pseudopilin GspH [KO:K02457]
J0G10_13810  gspH; type II secretion system minor pseudopilin GspH [KO:K02457]
J0G10_11640  gspI; type II secretion system minor pseudopilin GspI [KO:K02458]
J0G10_13880  gspI; type II secretion system minor pseudopilin GspI [KO:K02458]
J0G10_11625  prepilin-type N-terminal cleavage/methylation domain-containing protein [KO:K02459]
J0G10_13805  prepilin-type N-terminal cleavage/methylation domain-containing protein [KO:K02459]
J0G10_11650  gspK; type II secretion system minor pseudopilin GspK [KO:K02460]
J0G10_13890  gspK; type II secretion system minor pseudopilin GspK [KO:K02460]
J0G10_11655  type II secretion system protein GspL [KO:K02461]
J0G10_13895  type II secretion system protein GspL [KO:K02461]
J0G10_11660  type II secretion system protein M [KO:K02462]
J0G10_13900  type II secretion system protein M [KO:K02462]
J0G10_29480  tadA; Flp pilus assembly complex ATPase component TadA [KO:K02454] [EC:7.4.2.8]
J0G10_11670  gspE; type II secretion system ATPase GspE [KO:K02454] [EC:7.4.2.8]
J0G10_11945  type II/IV secretion system protein [KO:K02454] [EC:7.4.2.8]
J0G10_13910  gspE; type II secretion system ATPase GspE [KO:K02454] [EC:7.4.2.8]
J0G10_25370  secD; protein translocase subunit SecD [KO:K03072]
J0G10_25365  secF; protein translocase subunit SecF [KO:K03074]
J0G10_27795  secE; preprotein translocase subunit SecE [KO:K03073]
J0G10_05110  secG; preprotein translocase subunit SecG [KO:K03075]
J0G10_27630  secY; preprotein translocase subunit SecY [KO:K03076]
J0G10_25375  yajC; preprotein translocase subunit YajC [KO:K03210]
J0G10_00950  yidC; membrane protein insertase YidC [KO:K03217]
J0G10_24370  secA; preprotein translocase subunit SecA [KO:K03070] [EC:7.4.2.8]
J0G10_29060  ftsY; signal recognition particle-docking protein FtsY [KO:K03110]
J0G10_02750  secB; protein-export chaperone SecB [KO:K03071]
J0G10_06390  ffh; signal recognition particle protein [KO:K03106] [EC:3.6.5.4]
J0G10_02965  twin-arginine translocase TatA/TatE family subunit [KO:K03116]
J0G10_02960  tatB; Sec-independent protein translocase subunit TatB [KO:K03117]
J0G10_02955  tatC; twin-arginine translocase subunit TatC [KO:K03118]
J0G10_20200  ShlB/FhaC/HecB family hemolysin secretion/activation protein [KO:K11017]
J0G10_20195  hemagglutinin repeat-containing protein [KO:K11016]
J0G10_19630  tssI; type VI secretion system tip protein VgrG [KO:K11904]
J0G10_00310  type VI secretion system tip protein VgrG [KO:K11904]
J0G10_03350  type VI secretion system tip protein VgrG [KO:K11904]
J0G10_04255  type VI secretion protein [KO:K11904]
J0G10_16735  type VI secretion system tip protein VgrG [KO:K11904]
J0G10_17805  Hcp family type VI secretion system effector [KO:K11903]
J0G10_12235  Hcp family type VI secretion system effector [KO:K11903]
J0G10_00340  tssJ; type VI secretion system lipoprotein TssJ [KO:K11906]
J0G10_00325  tssM; type VI secretion system membrane subunit TssM [KO:K11891]
J0G10_00330  icmH; type IVB secretion system protein IcmH/DotU [KO:K11892]
J0G10_00360  tssH; type VI secretion system ATPase TssH [KO:K11907]
J0G10_00320  serine/threonine-protein phosphatase [KO:K11915] [EC:3.1.3.16]
Compound
C00002  ATP
Reference
PMID:11173102
  Authors
Kim JF.
  Title
Revisiting the chlamydial type III protein secretion system: clues to the origin of type III protein secretion.
  Journal
Trends Genet 17:65-9 (2001)
DOI:10.1016/S0168-9525(00)02175-2
Reference
PMID:11309112
  Authors
Plano GV, Day JB, Ferracci F.
  Title
Type III export: new uses for an old pathway.
  Journal
Mol Microbiol 40:284-93 (2001)
DOI:10.1046/j.1365-2958.2001.02354.x
Reference
PMID:11413015
  Authors
Gauthier A, Finlay BB.
  Title
Bacterial pathogenesis: the answer to virulence is in the pore.
  Journal
Curr Biol 11:R264-7 (2001)
DOI:10.1016/S0960-9822(01)00134-8
Reference
PMID:10047550
  Authors
Burns DL.
  Title
Biochemistry of type IV secretion.
  Journal
Curr Opin Microbiol 2:25-9 (1999)
DOI:10.1016/S1369-5274(99)80004-6
Reference
PMID:10920394
  Authors
Christie PJ, Vogel JP.
  Title
Bacterial type IV secretion: conjugation systems adapted to deliver effector molecules to host cells.
  Journal
Trends Microbiol 8:354-60 (2000)
DOI:10.1016/S0966-842X(00)01792-3
Reference
PMID:11309113
  Authors
Christie PJ.
  Title
Type IV secretion: intercellular transfer of macromolecules by systems ancestrally related to conjugation machines.
  Journal
Mol Microbiol 40:294-305 (2001)
DOI:10.1046/j.1365-2958.2001.02302.x
Reference
PMID:10481178
  Authors
Nunn D.
  Title
Bacterial type II protein export and pilus biogenesis: more than just homologies?
  Journal
Trends Cell Biol 9:402-8 (1999)
DOI:10.1016/S0962-8924(99)01634-7
Reference
PMID:11309111
  Authors
Sandkvist M.
  Title
Biology of type II secretion.
  Journal
Mol Microbiol 40:271-83 (2001)
DOI:10.1046/j.1365-2958.2001.02403.x
Reference
PMID:11349009
  Authors
Sandkvist M.
  Title
Type II secretion and pathogenesis.
  Journal
Infect Immun 69:3523-35 (2001)
DOI:10.1128/IAI.69.6.3523-3535.2001
Reference
PMID:15546664
  Authors
Delepelaire P
  Title
Type I secretion in gram-negative bacteria.
  Journal
Biochim Biophys Acta 1694:149-61 (2004)
DOI:10.1016/j.bbamcr.2004.05.001
Reference
PMID:18406342
  Authors
Hazes B, Frost L
  Title
Towards a systems biology approach to study type II/IV secretion systems.
  Journal
Biochim Biophys Acta 1778:1839-50 (2008)
DOI:10.1016/j.bbamem.2008.03.011
Reference
PMID:16448494
  Authors
Johnson TL, Abendroth J, Hol WG, Sandkvist M
  Title
Type II secretion: from structure to function.
  Journal
FEMS Microbiol Lett 255:175-86 (2006)
DOI:10.1111/j.1574-6968.2006.00102.x
Reference
PMID:15546665
  Authors
Filloux A
  Title
The underlying mechanisms of type II protein secretion.
  Journal
Biochim Biophys Acta 1694:163-79 (2004)
DOI:10.1016/j.bbamcr.2004.05.003
Reference
PMID:19396170
  Authors
Spreter T, Yip CK, Sanowar S, Andre I, Kimbrough TG, Vuckovic M, Pfuetzner RA, Deng W, Yu AC, Finlay BB, Baker D, Miller SI, Strynadka NC
  Title
A conserved structural motif mediates formation of the periplasmic rings in the type III secretion system.
  Journal
Nat Struct Mol Biol 16:468-76 (2009)
DOI:10.1038/nsmb.1603
Reference
PMID:15590783
  Authors
Ghosh P
  Title
Process of protein transport by the type III secretion system.
  Journal
Microbiol Mol Biol Rev 68:771-95 (2004)
DOI:10.1128/MMBR.68.4.771-795.2004
Reference
PMID:12360191
  Authors
Cornelis GR
  Title
The Yersinia Ysc-Yop 'type III' weaponry.
  Journal
Nat Rev Mol Cell Biol 3:742-52 (2002)
DOI:10.1038/nrm932
Reference
PMID:17215876
  Authors
Baron C
  Title
VirB8: a conserved type IV secretion system assembly factor and drug target.
  Journal
Biochem Cell Biol 84:890-9 (2006)
DOI:10.1139/o06-148
Reference
PMID:17943123
  Authors
Kwok T, Zabler D, Urman S, Rohde M, Hartig R, Wessler S, Misselwitz R, Berger J, Sewald N, Konig W, Backert S
  Title
Helicobacter exploits integrin for type IV secretion and kinase activation.
  Journal
Nature 449:862-6 (2007)
DOI:10.1038/nature06187
Reference
PMID:16092524
  Authors
Christie PJ, Cascales E
  Title
Structural and dynamic properties of bacterial type IV secretion systems (review).
  Journal
Mol Membr Biol 22:51-61 (2005)
DOI:10.1080/09687860500063316
Reference
PMID:15546668
  Authors
Christie PJ
  Title
Type IV secretion: the Agrobacterium VirB/D4 and related conjugation systems.
  Journal
Biochim Biophys Acta 1694:219-34 (2004)
DOI:10.1016/j.bbamcr.2004.02.013
Reference
PMID:15590781
  Authors
Henderson IR, Navarro-Garcia F, Desvaux M, Fernandez RC, Ala'Aldeen D
  Title
Type V protein secretion pathway: the autotransporter story.
  Journal
Microbiol Mol Biol Rev 68:692-744 (2004)
DOI:10.1128/MMBR.68.4.692-744.2004
Reference
PMID:9778731
  Authors
Henderson IR, Navarro-Garcia F, Nataro JP
  Title
The great escape: structure and function of the autotransporter proteins.
  Journal
Trends Microbiol 6:370-8 (1998)
DOI:10.1016/S0966-842X(98)01318-3
Reference
PMID:18524912
  Authors
Filloux A, Hachani A, Bleves S
  Title
The bacterial type VI secretion machine: yet another player for protein transport across membranes.
  Journal
Microbiology 154:1570-83 (2008)
DOI:10.1099/mic.0.2008/016840-0
Reference
PMID:19251641
  Authors
Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ
  Title
Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.
  Journal
Proc Natl Acad Sci U S A 106:4154-9 (2009)
DOI:10.1073/pnas.0813360106
Reference
PMID:17603507
  Authors
Kulasekara HD, Miller SI
  Title
Threonine phosphorylation times bacterial secretion.
  Journal
Nat Cell Biol 9:734-6 (2007)
DOI:10.1038/ncb0707-734
Reference
PMID:18078384
  Authors
Driessen AJ, Nouwen N
  Title
Protein translocation across the bacterial cytoplasmic membrane.
  Journal
Annu Rev Biochem 77:643-67 (2008)
DOI:10.1146/annurev.biochem.77.061606.160747
Reference
PMID:14641032
  Authors
Pool MR
  Title
Getting to the membrane: how is co-translational protein targeting to the endoplasmic reticulum regulated?
  Journal
Biochem Soc Trans 31:1232-7 (2003)
DOI:10.1042/bst0311232
Reference
PMID:19299134
  Authors
Desvaux M, Hebraud M, Talon R, Henderson IR
  Title
Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue.
  Journal
Trends Microbiol 17:139-45 (2009)
DOI:10.1016/j.tim.2009.01.004
Reference
PMID:15063851
  Authors
Nakatogawa H, Murakami A, Ito K
  Title
Control of SecA and SecM translation by protein secretion.
  Journal
Curr Opin Microbiol 7:145-50 (2004)
DOI:10.1016/j.mib.2004.01.001
KO pathway
ko03070   
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