KEGG   PATHWAY: pgg02010
Entry
pgg02010                    Pathway                                
Name
ABC transporters - Pseudomonas graminis
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
pgg02010  ABC transporters
pgg02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas graminis [GN:pgg]
Gene
FX982_00059  [KO:K15553]
FX982_00063  [KO:K15553]
FX982_00230  [KO:K23061]
FX982_00232  [KO:K23062]
FX982_00233  [KO:K23063]
FX982_00234  [KO:K23064]
FX982_00280  [KO:K02002]
FX982_00303  [KO:K18893]
FX982_00318  [KO:K01999]
FX982_00319  [KO:K01997]
FX982_00320  [KO:K01998]
FX982_00321  [KO:K01995]
FX982_00322  [KO:K01996]
FX982_00347  [KO:K10014]
FX982_00348  [KO:K10016]
FX982_00349  [KO:K10015]
FX982_00351  [KO:K10017] [EC:7.4.2.1]
FX982_00375  [KO:K02010] [EC:7.2.2.7]
FX982_00381  [KO:K10001]
FX982_00382  [KO:K10003]
FX982_00383  [KO:K10002]
FX982_00384  [KO:K10004] [EC:7.4.2.1]
FX982_00610  [KO:K07122]
FX982_00611  [KO:K07323]
FX982_00612  [KO:K02067]
FX982_00613  [KO:K02066]
FX982_00614  [KO:K02065]
FX982_00619  [KO:K06861] [EC:7.5.2.5]
FX982_00635  [KO:K10112] [EC:7.5.2.-]
FX982_00636  [KO:K17317]
FX982_00637  [KO:K17316]
FX982_00638  [KO:K17315]
FX982_00657  [KO:K11720]
FX982_00658  [KO:K07091]
FX982_00674  [KO:K09972] [EC:7.4.2.1]
FX982_00675  [KO:K09971]
FX982_00676  [KO:K09970]
FX982_00677  [KO:K09969]
FX982_00866  [KO:K12541]
FX982_00876  [KO:K12536]
FX982_00879  [KO:K09690]
FX982_00880  [KO:K09691] [EC:7.5.2.14]
FX982_00986  [KO:K06858]
FX982_01286  [KO:K09811]
FX982_01287  [KO:K09812]
FX982_01329  [KO:K02424]
FX982_01330  [KO:K10009]
FX982_01331  [KO:K10010] [EC:7.4.2.1]
FX982_01337  [KO:K02073]
FX982_01338  [KO:K02071]
FX982_01339  [KO:K02072]
FX982_01345  [KO:K15553]
FX982_01346  [KO:K15554]
FX982_01347  [KO:K15555] [EC:7.6.2.14]
FX982_01349  [KO:K02073]
FX982_01356  [KO:K02045] [EC:7.3.2.3]
FX982_01357  [KO:K02047]
FX982_01358  [KO:K02046]
FX982_01359  [KO:K23163]
FX982_01413  [KO:K02066]
FX982_01414  [KO:K02065]
FX982_01415  [KO:K02067]
FX982_01435  [KO:K09815]
FX982_01437  [KO:K09817] [EC:7.2.2.20]
FX982_01438  [KO:K09816]
FX982_01441  [KO:K02071]
FX982_01442  [KO:K02072]
FX982_01443  [KO:K02073]
FX982_01469  [KO:K02002]
FX982_01579  [KO:K02040]
FX982_01580  [KO:K02037]
FX982_01581  [KO:K02038]
FX982_01582  [KO:K02036] [EC:7.3.2.1]
FX982_01620  [KO:K12368]
FX982_01710  [KO:K02012]
FX982_01711  [KO:K02011]
FX982_01773  [KO:K23057]
FX982_01774  [KO:K23056]
FX982_01775  [KO:K23055]
FX982_01776  [KO:K23058]
FX982_01804  [KO:K15552]
FX982_01805  [KO:K10831] [EC:7.6.2.7]
FX982_01806  [KO:K15551]
FX982_01809  [KO:K15553]
FX982_01810  [KO:K15554]
FX982_01811  [KO:K15555] [EC:7.6.2.14]
FX982_01818  [KO:K11073]
FX982_01819  [KO:K11073]
FX982_01820  [KO:K11076] [EC:7.6.2.16]
FX982_01821  [KO:K11075]
FX982_01822  [KO:K11074]
FX982_01850  [KO:K02000] [EC:7.6.2.9]
FX982_01851  [KO:K02001]
FX982_01852  [KO:K02002]
FX982_01955  [KO:K02000] [EC:7.6.2.9]
FX982_01956  [KO:K02001]
FX982_01957  [KO:K02002]
FX982_01979  [KO:K11085] [EC:7.5.2.6]
FX982_02050  [KO:K01999]
FX982_02051  [KO:K01997]
FX982_02052  [KO:K01998]
FX982_02053  [KO:K01995]
FX982_02054  [KO:K01996]
FX982_02081  [KO:K11963]
FX982_02082  [KO:K11962]
FX982_02083  [KO:K11961]
FX982_02084  [KO:K11960]
FX982_02085  [KO:K11959]
FX982_02179  [KO:K02040]
FX982_02256  [KO:K10439]
FX982_02257  [KO:K10441] [EC:7.5.2.7]
FX982_02258  [KO:K10440]
FX982_02283  [KO:K02002]
FX982_02341  [KO:K05846]
FX982_02342  [KO:K05845]
FX982_02343  [KO:K05846]
FX982_02344  [KO:K05847] [EC:7.6.2.9]
FX982_02357  [KO:K12372]
FX982_02358  [KO:K12371]
FX982_02359  [KO:K12370]
FX982_02360  [KO:K12369]
FX982_02361  [KO:K12368]
FX982_02363  [KO:K12368]
FX982_02364  [KO:K12368]
FX982_02365  [KO:K12368]
FX982_02370  [KO:K02471]
FX982_02648  [KO:K18893]
FX982_02737  [KO:K02002]
FX982_02791  [KO:K10022]
FX982_02792  [KO:K10024]
FX982_02793  [KO:K10023]
FX982_02795  [KO:K10025] [EC:7.4.2.1]
FX982_02864  [KO:K17324]
FX982_02865  [KO:K17325]
FX982_02866  [KO:K17322]
FX982_02867  [KO:K17323]
FX982_02869  [KO:K17321]
FX982_02881  [KO:K13896]
FX982_02882  [KO:K13895]
FX982_02883  [KO:K13894]
FX982_02884  [KO:K13893]
FX982_02885  [KO:K13893]
FX982_02936  [KO:K17213]
FX982_02937  [KO:K17215]
FX982_02938  [KO:K17214]
FX982_03103  [KO:K15553]
FX982_03275  [KO:K09808]
FX982_03276  [KO:K09810] [EC:7.6.2.-]
FX982_03277  [KO:K09808]
FX982_03356  [KO:K15554]
FX982_03357  [KO:K15555] [EC:7.6.2.14]
FX982_03397  [KO:K10439]
FX982_03398  [KO:K10441] [EC:7.5.2.7]
FX982_03399  [KO:K10440]
FX982_03402  [KO:K06726] [EC:5.4.99.62]
FX982_03572  [KO:K02020]
FX982_03641  [KO:K10439]
FX982_03642  [KO:K10441] [EC:7.5.2.7]
FX982_03643  [KO:K10440]
FX982_03644  [KO:K10440]
FX982_03695  [KO:K15554]
FX982_03696  [KO:K15553]
FX982_03744  [KO:K13896]
FX982_03745  [KO:K13895]
FX982_03746  [KO:K13894]
FX982_03747  [KO:K13893]
FX982_03836  [KO:K02017] [EC:7.3.2.5]
FX982_03837  [KO:K02018]
FX982_03838  [KO:K02020]
FX982_03906  [KO:K11073]
FX982_03920  [KO:K02044]
FX982_03928  [KO:K10227]
FX982_04040  [KO:K02040]
FX982_04121  [KO:K12541]
FX982_04136  [KO:K15553]
FX982_04232  [KO:K02042]
FX982_04233  [KO:K02044]
FX982_04234  [KO:K02041] [EC:7.3.2.2]
FX982_04266  [KO:K13893]
FX982_04267  [KO:K13894]
FX982_04268  [KO:K13895]
FX982_04269  [KO:K13896]
FX982_04274  [KO:K10439]
FX982_04275  [KO:K10440]
FX982_04276  [KO:K10441] [EC:7.5.2.7]
FX982_04381  [KO:K10227]
FX982_04382  [KO:K10228]
FX982_04383  [KO:K10229]
FX982_04384  [KO:K10111] [EC:7.5.2.-]
FX982_04441  [KO:K10111] [EC:7.5.2.-]
FX982_04459  [KO:K06159]
FX982_04462  [KO:K13409]
FX982_04469  [KO:K10543]
FX982_04470  [KO:K10545] [EC:7.5.2.10]
FX982_04471  [KO:K10544]
FX982_04532  [KO:K02036] [EC:7.3.2.1]
FX982_04533  [KO:K02038]
FX982_04534  [KO:K02037]
FX982_04535  [KO:K02040]
FX982_04565  [KO:K10538]
FX982_04566  [KO:K10539] [EC:7.5.2.12]
FX982_04567  [KO:K10537]
FX982_04756  [KO:K02048]
FX982_04763  [KO:K02196]
FX982_04764  [KO:K02195]
FX982_04765  [KO:K02194]
FX982_04766  [KO:K02193] [EC:7.6.2.5]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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