KEGG   PATHWAY: phq02010
Entry
phq02010                    Pathway                                
Name
ABC transporters - Phaeobacter sp. LSS9
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
phq02010  ABC transporters
phq02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Phaeobacter sp. LSS9 [GN:phq]
Gene
D1820_08580  sulfate ABC transporter substrate-binding protein [KO:K05772]
D1820_08590  ABC transporter permease subunit [KO:K05773]
D1820_08585  ATP-binding cassette domain-containing protein [KO:K06857] [EC:7.3.2.6]
D1820_17600  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
D1820_17595  molybdate ABC transporter permease [KO:K02018]
D1820_17590  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
D1820_11050  Fe(3+) ABC transporter substrate-binding protein [KO:K02012]
D1820_17030  ABC transporter substrate-binding protein [KO:K02012]
D1820_11065  iron ABC transporter permease [KO:K02011]
D1820_01090  ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
D1820_11995  thiamine ABC transporter substrate binding subunit [KO:K02064]
D1820_11990  thiamine/thiamine pyrophosphate ABC transporter permease ThiP [KO:K02063]
D1820_11985  ATP-binding cassette domain-containing protein [KO:K02062] [EC:7.6.2.15]
D1820_13865  extracellular solute-binding protein [KO:K11069]
D1820_13880  ABC transporter permease [KO:K11070]
D1820_13875  ABC transporter permease [KO:K11071]
D1820_13870  ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
D1820_12180  polyamine ABC transporter substrate-binding protein [KO:K11073]
D1820_12195  putrescine ABC transporter permease PotI [KO:K11074]
D1820_12190  ABC transporter permease subunit [KO:K11075]
D1820_12185  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
D1820_10950  amino acid-binding protein [KO:K02002]
D1820_10940  ABC transporter permease subunit [KO:K02001]
D1820_10945  ATP-binding cassette domain-containing protein [KO:K02000] [EC:7.6.2.9]
D1820_04310  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
D1820_08685  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
D1820_02720  ABC transporter ATP-binding protein [KO:K10111] [EC:7.5.2.-]
D1820_16750  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
D1820_18690  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
D1820_08375  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10112] [EC:7.5.2.-]
D1820_08665  carbohydrate ABC transporter substrate-binding protein [KO:K10117]
D1820_08670  sugar ABC transporter permease [KO:K10118]
D1820_08675  carbohydrate ABC transporter permease [KO:K10119]
D1820_02735  sugar ABC transporter substrate-binding protein [KO:K10227]
D1820_02730  sugar ABC transporter permease [KO:K10228]
D1820_02725  carbohydrate ABC transporter permease [KO:K10229]
D1820_17005  carbohydrate ABC transporter substrate-binding protein [KO:K10232]
D1820_17010  sugar ABC transporter permease [KO:K10233]
D1820_17015  carbohydrate ABC transporter permease [KO:K10234]
D1820_17025  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10235]
D1820_09380  ABC transporter substrate-binding protein [KO:K07323]
D1820_02315  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
D1820_01195  ABC transporter permease [KO:K02066]
D1820_01190  ATP-binding cassette domain-containing protein [KO:K02065]
D1820_14845  BMP family ABC transporter substrate-binding protein [KO:K07335]
D1820_08160  BMP family ABC transporter substrate-binding protein [KO:K07335]
D1820_08795  BMP family ABC transporter substrate-binding protein [KO:K07335]
D1820_08170  ABC transporter permease [KO:K23535]
D1820_14835  ABC transporter permease [KO:K23535]
D1820_08780  ABC transporter permease [KO:K23535]
D1820_08175  ABC transporter permease [KO:K23536]
D1820_14830  ABC transporter permease [KO:K23536]
D1820_08790  ABC transporter permease [KO:K23536]
D1820_08165  ABC transporter ATP-binding protein [KO:K23537]
D1820_14840  ABC transporter ATP-binding protein [KO:K23537]
D1820_08775  ABC transporter ATP-binding protein [KO:K23537]
D1820_18675  carbohydrate ABC transporter substrate-binding protein [KO:K17315]
D1820_18680  sugar ABC transporter permease [KO:K17316]
D1820_18685  carbohydrate ABC transporter permease [KO:K17317]
D1820_15405  ABC transporter substrate-binding protein [KO:K10439]
D1820_15425  sugar ABC transporter substrate-binding protein [KO:K10439]
D1820_15480  sugar ABC transporter substrate-binding protein [KO:K10439]
D1820_15505  sugar ABC transporter substrate-binding protein [KO:K10439]
D1820_15390  ABC transporter permease [KO:K10440]
D1820_15395  ABC transporter permease [KO:K10440]
D1820_15410  ABC transporter permease [KO:K10440]
D1820_15420  ABC transporter permease [KO:K10440]
D1820_15485  ABC transporter permease [KO:K10440]
D1820_15515  ABC transporter permease [KO:K10440]
D1820_15400  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
D1820_15415  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
D1820_15490  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
D1820_15510  sugar ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
D1820_18210  xylF; D-xylose ABC transporter substrate-binding protein [KO:K10543]
D1820_18205  sugar ABC transporter permease [KO:K10544]
D1820_18200  sugar ABC transporter ATP-binding protein [KO:K10545] [EC:7.5.2.10]
D1820_08735  sugar ABC transporter substrate-binding protein [KO:K10552]
D1820_08730  ABC transporter permease [KO:K10553]
D1820_08725  sugar ABC transporter ATP-binding protein [KO:K10554]
D1820_15725  carbohydrate ABC transporter substrate-binding protein [KO:K17321]
D1820_15710  sugar ABC transporter permease [KO:K17322]
D1820_15705  carbohydrate ABC transporter permease [KO:K17323]
D1820_15720  ABC transporter ATP-binding protein [KO:K17324]
D1820_15715  ABC transporter ATP-binding protein [KO:K17325]
D1820_14200  extracellular solute-binding protein [KO:K05813]
D1820_14205  ABC transporter permease subunit [KO:K05814]
D1820_14210  ABC transporter permease subunit [KO:K05815]
D1820_14215  sn-glycerol-3-phosphate import ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
D1820_03870  phosphonate ABC transporter substrate-binding protein [KO:K02040]
D1820_12250  cell envelope biogenesis protein OmpA [KO:K02040]
D1820_03865  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
D1820_03860  pstA; phosphate ABC transporter permease PstA [KO:K02038]
D1820_03855  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
D1820_14955  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
D1820_14960  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
D1820_14965  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
D1820_14950  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
D1820_10120  amino acid ABC transporter substrate-binding protein [KO:K09969]
D1820_10115  ABC transporter permease subunit [KO:K09970]
D1820_10110  amino acid ABC transporter permease [KO:K09971]
D1820_10105  amino acid ABC transporter ATP-binding protein [KO:K09972] [EC:7.4.2.1]
D1820_18360  amino acid ABC transporter substrate-binding protein [KO:K16961]
D1820_18365  amino acid ABC transporter permease [KO:K16962]
D1820_18370  amino acid ABC transporter ATP-binding protein [KO:K16963]
D1820_13820  ABC transporter permease [KO:K01999]
D1820_04255  ABC transporter substrate-binding protein [KO:K01999]
D1820_11080  ABC transporter permease [KO:K01999]
D1820_03920  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
D1820_14170  branched-chain amino acid ABC transporter substrate-binding protein [KO:K01999]
D1820_02365  ABC transporter substrate-binding protein [KO:K01999]
D1820_13805  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_04250  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_14145  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_11100  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_03940  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_02360  branched-chain amino acid ABC transporter permease [KO:K01997]
D1820_04245  branched-chain amino acid ABC transporter permease [KO:K01998]
D1820_13800  branched-chain amino acid ABC transporter permease [KO:K01998]
D1820_14150  branched-chain amino acid ABC transporter permease [KO:K01998]
D1820_11085  branched-chain amino acid ABC transporter permease [KO:K01998]
D1820_03945  branched-chain amino acid ABC transporter permease [KO:K01998]
D1820_13815  ABC transporter ATP-binding protein [KO:K01995]
D1820_04240  ABC transporter ATP-binding protein [KO:K01995]
D1820_14155  ABC transporter ATP-binding protein [KO:K01995]
D1820_02350  ABC transporter ATP-binding protein [KO:K01995]
D1820_11105  ABC transporter ATP-binding protein [KO:K01995]
D1820_03925  ABC transporter ATP-binding protein [KO:K01995]
D1820_04235  ABC transporter ATP-binding protein [KO:K01996]
D1820_13810  ABC transporter ATP-binding protein [KO:K01996]
D1820_14160  ABC transporter ATP-binding protein [KO:K01996]
D1820_02345  ABC transporter ATP-binding protein [KO:K01996]
D1820_11075  ABC transporter ATP-binding protein [KO:K01996]
D1820_03930  ABC transporter ATP-binding protein [KO:K01996]
D1820_11635  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
D1820_11630  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
D1820_11625  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
D1820_11620  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
D1820_11615  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
D1820_09775  ABC transporter substrate-binding protein [KO:K13893]
D1820_09770  yejB; microcin C ABC transporter permease YejB [KO:K13894]
D1820_09765  ABC transporter permease [KO:K13895]
D1820_09760  ABC transporter ATP-binding protein [KO:K13896]
D1820_07640  iron-siderophore ABC transporter substrate-binding protein [KO:K25286]
D1820_07645  iron ABC transporter permease [KO:K23186]
D1820_07650  enterobactin ABC transporter permease [KO:K23187]
D1820_07655  ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
D1820_17580  zinc transporter [KO:K09815]
D1820_05865  metal-binding protein ZinT [KO:K09815]
D1820_17565  hypothetical protein [KO:K09816]
D1820_17570  metal ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
D1820_11185  manganese transporter [KO:K11707]
D1820_11175  metal ABC transporter permease [KO:K11708]
D1820_11170  metal ABC transporter permease [KO:K11709]
D1820_11180  metal ABC transporter ATP-binding protein [KO:K11710] [EC:7.2.2.5]
D1820_18275  sugar transporter [KO:K10107]
D1820_07055  capsule biosynthesis protein [KO:K10107]
D1820_18280  sugar ABC transporter permease [KO:K09688]
D1820_18270  ABC transporter ATP-binding protein [KO:K09689] [EC:7.6.2.12]
D1820_07050  ATP-binding cassette domain-containing protein [KO:K09689] [EC:7.6.2.12]
D1820_06155  lipoprotein-releasing ABC transporter permease subunit [KO:K09808]
D1820_06150  ABC transporter ATP-binding protein [KO:K09810] [EC:7.6.2.-]
D1820_05035  heme ABC transporter permease [KO:K02195]
D1820_05040  ccmB; heme exporter protein CcmB [KO:K02194]
D1820_05045  ccmA; heme ABC exporter ATP-binding protein CcmA [KO:K02193] [EC:7.6.2.5]
D1820_05330  lptF; LPS export ABC transporter permease LptF [KO:K07091]
D1820_05335  lptG; LPS export ABC transporter permease LptG [KO:K11720]
D1820_12960  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
D1820_18955  ABC transporter permease [KO:K19341]
D1820_18960  ABC transporter ATP-binding protein [KO:K19340]
D1820_14610  cell division protein FtsX [KO:K09811]
D1820_14605  ATP-binding cassette domain-containing protein [KO:K09812]
D1820_06870  ATP-binding cassette domain-containing protein [KO:K11085] [EC:7.5.2.6]
D1820_05120  ABC transporter ATP-binding protein/permease [KO:K24821]
D1820_12385  ABC transporter ATP-binding protein [KO:K18893]
D1820_13035  ATP-binding cassette domain-containing protein [KO:K12541]
D1820_14070  ATP-binding cassette domain-containing protein [KO:K12541]
D1820_13040  ATP-binding cassette domain-containing protein [KO:K12541]
D1820_09370  type I secretion system permease/ATPase [KO:K12536]
D1820_18320  type I secretion system permease/ATPase [KO:K12536]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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