KEGG   PATHWAY: pjd03030
Entry
pjd03030                    Pathway                                
Name
DNA replication - Paenibacillus sp. JDR-2
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
pjd03030  DNA replication
pjd03030

Organism
Paenibacillus sp. JDR-2 [GN:pjd]
Gene
Pjdr2_2143  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Pjdr2_4482  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Pjdr2_3412  DNA polymerase III, alpha subunit [KO:K03763] [EC:2.7.7.7]
Pjdr2_0144  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Pjdr2_0016  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Pjdr2_2197  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Pjdr2_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Pjdr2_6259  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Pjdr2_1593  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
Pjdr2_2243  DNA primase [KO:K02316] [EC:2.7.7.101]
Pjdr2_6272  single-strand binding protein [KO:K03111]
Pjdr2_3850  ribonuclease H-related protein [KO:K03469] [EC:3.1.26.4]
Pjdr2_3095  ribonuclease H [KO:K03469] [EC:3.1.26.4]
Pjdr2_0805  Ribonuclease H [KO:K03469] [EC:3.1.26.4]
Pjdr2_3474  Ribonuclease H [KO:K03470] [EC:3.1.26.4]
Pjdr2_1523  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Pjdr2_5719  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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