KEGG   PATHWAY: plg00920
Entry
plg00920                    Pathway                                
Name
Sulfur metabolism - Paucimonas lemoignei
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
plg00920  Sulfur metabolism
plg00920

Module
plg_M00021  Cysteine biosynthesis, serine => cysteine [PATH:plg00920]
plg_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:plg00920]
Other DBs
GO: 0006790
Organism
Paucimonas lemoignei [GN:plg]
Gene
NCTC10937_03773  sbp_1; extracellular solute-binding protein [KO:K02048]
NCTC10937_05058  sbp_2; sulfate-binding protein [KO:K23163]
NCTC10937_05057  cysW_3; binding-protein dependent transport system inner membrane protein [KO:K02046]
NCTC10937_05056  cysW_2; sulfate ABC transporter permease [KO:K02047]
NCTC10937_05055  cysA_2; sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
NCTC10937_03475  tauA; taurine ABC transporter periplasmic binding protein [KO:K15551]
NCTC10937_03477  ssuC_4; binding-protein dependent transport system inner membrane protein [KO:K15552]
NCTC10937_03476  cmpD_2; taurine ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
NCTC10937_03478  tauD2; alpha-ketoglutarate-dependent taurine dioxygenase TauD [KO:K03119] [EC:1.14.11.17]
NCTC10937_03461  ABC transporter substrate-binding protein [KO:K15553]
NCTC10937_00455  ssuA_1; ABC transporter, substrate-binding protein, aliphatic sulfonates [KO:K15553]
NCTC10937_02908  ssuA_3; aliphatic sulfonate ABC transporter periplasmic substrate-binding protein [KO:K15553]
NCTC10937_03474  ssuA_4; alkanesulfonate transporter substrate-binding subunit [KO:K15553]
NCTC10937_03480  ssuA_5; putative phosphorous compounds metabolism-like protein [KO:K15553]
NCTC10937_03481  ssuA_6; ABC transporter, substrate-binding protein, aliphatic sulfonates [KO:K15553]
NCTC10937_03897  ssuA_7; ABC transporter, substrate-binding protein, aliphatic sulfonates [KO:K15553]
NCTC10937_05040  ABC transporter, periplasmic substrate-binding protein [KO:K15553]
NCTC10937_00456  ssuC_1; binding-protein dependent transport system inner membrane protein [KO:K15554]
NCTC10937_03482  ssuC_5; binding-protein dependent transport system inner membrane protein [KO:K15554]
NCTC10937_03485  ssuC_6; binding-protein dependent transport system inner membrane protein [KO:K15554]
NCTC10937_05041  ssuC_7; binding-protein dependent transport system inner membrane protein [KO:K15554]
NCTC10937_00457  ssuB_1; aliphatic sulfonates transport ATP-binding subunit [KO:K15555] [EC:7.6.2.14]
NCTC10937_03483  ssuB_3; putative sulfate ester ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NCTC10937_03484  ssuB_4; ABC transporter [KO:K15555] [EC:7.6.2.14]
NCTC10937_05042  cmpD_3; ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NCTC10937_01894  ssuD_1; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
NCTC10937_03479  ssuD_2; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
NCTC10937_03578  ssuE; NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
NCTC10937_01044  cysNC; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase [KO:K00955] [EC:2.7.7.4 2.7.1.25]
NCTC10937_01042  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
NCTC10937_00249  cysQ; 3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
NCTC10937_02261  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
NCTC10937_04410  narB; putative nitrate/sulfite reductase [KO:K00380] [EC:1.8.1.2]
NCTC10937_04591  cysJ; oxidoreductase FAD/NAD(P)-binding:PepSY-associated TM helix:flavodoxin/nitric oxide synthase [KO:K00380] [EC:1.8.1.2]
NCTC10937_02482  sir_2; sulfite reductase [KO:K00381] [EC:1.8.1.2]
NCTC10937_00400  sseA; rhodanese-like domain-containing protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NCTC10937_00742  rhdA; bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NCTC10937_04941  glpE; thiosulfate sulfurtransferase [KO:K02439] [EC:2.8.1.1]
NCTC10937_05000  cysE_2; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC10937_01350  cysE_1; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
NCTC10937_01591  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
NCTC10937_00365  metX_1; homoserine O-acetyltransferase MetX [KO:K00641] [EC:2.3.1.31 2.3.1.46]
NCTC10937_05025  metX_2; hydrolase, alpha/beta fold family [KO:K00641] [EC:2.3.1.31 2.3.1.46]
NCTC10937_01731  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
NCTC10937_00569  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
NCTC10937_00567  dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
plg00260  Glycine, serine and threonine metabolism
plg00270  Cysteine and methionine metabolism
plg00680  Methane metabolism
plg00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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