KEGG   PATHWAY: psep03030
Entry
psep03030                   Pathway                                
Name
DNA replication - Pseudomonas sessilinigenes
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
psep03030  DNA replication
psep03030

Organism
Pseudomonas sessilinigenes [GN:psep]
Gene
C4K39_2800  DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
C4K39_3974  Exonuclease [KO:K02342] [EC:2.7.7.7]
C4K39_4252  DEDDh DNA polymerase III 3'-5' exonuclease domain [KO:K02342] [EC:2.7.7.7]
C4K39_1195  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
C4K39_2004  DNA polymerase III, gamma-tau subunit [KO:K02343] [EC:2.7.7.7]
C4K39_1878  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
C4K39_4208  DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
C4K39_1069  DNA polymerase III chi subunit [KO:K02339] [EC:2.7.7.7]
C4K39_0002  DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
C4K39_0578  Replicative DNA helicase (DnaB) [KO:K02314] [EC:5.6.2.3]
C4K39_3187  Replicative DNA helicase (DnaB) [KO:K02314] [EC:5.6.2.3]
C4K39_4011  DNA primase [KO:K02316] [EC:2.7.7.101]
C4K39_3177  Single-stranded DNA-binding protein in PFGI-1-like cluster [KO:K03111]
C4K39_4115  Single-stranded DNA-binding protein [KO:K03111]
C4K39_2781  Ribonuclease HI [KO:K03469] [EC:3.1.26.4]
C4K39_1194  Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
C4K39_0087  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
C4K39_1994  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
C4K39_3877  DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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