KEGG   PATHWAY: pym00920
Entry
pym00920                    Pathway                                
Name
Sulfur metabolism - Pseudomonas yamanorum
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
pym00920  Sulfur metabolism
pym00920

Module
pym_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pym00920]
pym_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:pym00920]
Other DBs
GO: 0006790
Organism
Pseudomonas yamanorum [GN:pym]
Gene
AK972_1548  Sulfate and thiosulfate binding protein CysP [KO:K02048]
AK972_5752  Sulfate and thiosulfate binding protein CysP [KO:K23163]
AK972_5751  Sulfate transport system permease protein CysT [KO:K02046]
AK972_5750  Sulfate transport system permease protein CysW [KO:K02047]
AK972_5749  Sulfate and thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
AK972_2129  Taurine-binding periplasmic protein TauA [KO:K15551]
AK972_5693  Taurine-binding periplasmic protein TauA [KO:K15551]
AK972_5695  Taurine transport system permease protein TauC [KO:K15552]
AK972_5694  Taurine transport ATP-binding protein TauB [KO:K10831] [EC:7.6.2.7]
AK972_2130  Alpha-ketoglutarate-dependent taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
AK972_5696  Alpha-ketoglutarate-dependent taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
AK972_2755  ABC-type nitrate/sulfonate/bicarbonate transport system [KO:K15553]
AK972_3383  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_3385  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_3410  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_5740  Alkanesulfonates-binding protein [KO:K15553]
AK972_0070  Alkanesulfonates-binding protein [KO:K15553]
AK972_1216  Alkanesulfonates-binding protein [KO:K15553]
AK972_2873  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_3375  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_2256  ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553]
AK972_3501  Hydroxymethylpyrimidine ABC transporter, substrate-binding component [KO:K15553]
AK972_5796  Taurine-binding periplasmic protein TauA [KO:K15553]
AK972_2848  Alkanesulfonates-binding protein [KO:K15553]
AK972_2754  Alkanesulfonates transport system permease protein [KO:K15554]
AK972_3377  Alkanesulfonates transport system permease protein [KO:K15554]
AK972_5741  Alkanesulfonates transport system permease protein [KO:K15554]
AK972_0072  Alkanesulfonates transport system permease protein [KO:K15554]
AK972_5794  Taurine transport system permease protein TauC [KO:K15554]
AK972_3502  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554]
AK972_2849  Alkanesulfonates transport system permease protein [KO:K15554]
AK972_2753  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [KO:K15555] [EC:7.6.2.14]
AK972_3376  Alkanesulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AK972_5742  Alkanesulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
AK972_0073  Alkanesulfonates ABC transporter ATP-binding [KO:K15555] [EC:7.6.2.14]
AK972_5795  Taurine transport ATP-binding protein TauB [KO:K15555] [EC:7.6.2.14]
AK972_2850  Various polyols ABC transporter, ATP-binding component [KO:K15555] [EC:7.6.2.14]
AK972_3503  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [KO:K15555] [EC:7.6.2.14]
AK972_3378  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AK972_1732  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AK972_0071  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
AK972_1733  FMN reductase [KO:K00299] [EC:1.5.1.38]
AK972_0069  FMN reductase [KO:K00299] [EC:1.5.1.38]
AK972_5005  Sulfate adenylyltransferase subunit 1 [KO:K00955] [EC:2.7.7.4 2.7.1.25]
AK972_5006  Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
AK972_5665  3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
AK972_4350  Phosphoadenylyl-sulfate reductase/Adenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
AK972_0658  putative iron-regulated membrane protein [KO:K00380] [EC:1.8.1.2]
AK972_2426  Sulfite reductase [NADPH] hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
AK972_1826  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K17218] [EC:1.8.5.4]
AK972_5413  Thiosulfate sulfurtransferase, rhodanese [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AK972_0142  Thiosulfate sulfurtransferase, rhodanese [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AK972_0352  Thiosulfate sulfurtransferase GlpE [KO:K02439] [EC:2.8.1.1]
AK972_4862  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AK972_5703  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AK972_4334  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AK972_4430  Cysteine synthase [KO:K01738] [EC:2.5.1.47]
AK972_4649  Cysteine synthase [KO:K01738] [EC:2.5.1.47]
AK972_4333  Cysteine synthase [KO:K01738] [EC:2.5.1.47]
AK972_0161  Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AK972_3860  O-acetylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
AK972_5187  Cystathionine gamma-lyase [KO:K17217] [EC:4.4.1.1 4.4.1.2]
AK972_2648  Coenzyme N5,N10-methylene tetrahydromethanopterin reductase [KO:K17228] [EC:1.14.14.35]
AK972_0320  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
AK972_0321  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
AK972_0318  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
pym00260  Glycine, serine and threonine metabolism
pym00270  Cysteine and methionine metabolism
pym00680  Methane metabolism
pym00720  Other carbon fixation pathways
KO pathway
ko00920   
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