KEGG   PATHWAY: rer00920
Entry
rer00920                    Pathway                                
Name
Sulfur metabolism - Rhodococcus erythropolis PR4
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rer00920  Sulfur metabolism
rer00920

Module
rer_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rer00920]
rer_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:rer00920]
Other DBs
GO: 0006790
Organism
Rhodococcus erythropolis PR4 [GN:rer]
Gene
RER_37560  subI; sulfate ABC transporter sulfate-binding protein [KO:K23163]
RER_37550  cysT; sulfate ABC transporter permease protein [KO:K02046]
RER_37540  cysW; sulfate ABC transporter permease protein [KO:K02047]
RER_37530  cysA; sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
RER_48620  putative ABC transporter substrate-binding protein [KO:K15551]
RER_48630  putative ABC transporter permease protein [KO:K15552]
RER_48610  putative ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
RER_45120  putative dioxygenase [KO:K03119] [EC:1.14.11.17]
RER_58610  ssuA; putative aliphatic sulfonates ABC transporter substrate-binding protein [KO:K15553]
RER_58540  ssuA; putative aliphatic sulfonates ABC transporter substrate-binding protein [KO:K15553]
RER_08220  putative ABC transporter substrate-binding protein [KO:K15553]
RER_08230  putative ABC transporter substrate-binding protein [KO:K15553]
RER_58550  ssuC; putative aliphatic sulfonates ABC transporter permease protein [KO:K15554]
RER_08250  putative ABC transporter permease protein [KO:K15554]
RER_58560  ssuB; putative aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
RER_08240  putative ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
RER_53410  ssuD; putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RER_58580  conserved hypothetical protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RER_58590  ssuD; putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RER_36390  conserved hypothetical protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
RER_48740  putative NADH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
RER_01260  cysNC; bifunctional protein CysNC [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RER_39360  cysNC; bifunctional protein CysNC [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RER_16540  cysNC; bifunctional protein CysNC [KO:K00955] [EC:2.7.7.4 2.7.1.25]
RER_37490  cysN; sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
RER_16530  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RER_01270  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RER_39370  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RER_37480  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
RER_16520  putative sugar-phosphate phosphatase [KO:K01082] [EC:3.1.3.7]
RER_39350  cysQ; putative 3'-phosphoadenosine-5'-phosphatase [KO:K01082] [EC:3.1.3.7]
RER_26350  conserved hypothetical protein [KO:K06881] [EC:3.1.3.7 3.1.13.3]
RER_37470  cysH; probable adenosine 5'-phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RER_pREL1-00830  hypothetical protein [KO:K00390] [EC:1.8.4.8 1.8.4.10]
RER_56710  cysJ; putative NADPH--sulfite reductase flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
RER_19920  putative nitrate/sulfite reductase [KO:K00380] [EC:1.8.1.2]
RER_37460  sirA; sulfite reductase [KO:K00392] [EC:1.8.7.1]
RER_pREL1-02190  putative sulfide--quinone oxidoreductase [KO:K17218] [EC:1.8.5.4]
RER_36410  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RER_39860  putative 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RER_21240  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RER_48100  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
RER_10920  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
RER_10910  cysK; cysteine synthase [KO:K01738] [EC:2.5.1.47]
RER_16760  putative lyase [KO:K01738] [EC:2.5.1.47]
RER_20020  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
RER_42650  metB; probable cystathionine gamma-synthase/cystathionine gamma-lyase [KO:K01739] [EC:2.5.1.48]
RER_14440  metZ; probable O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
RER_55130  putative FMNH2-dependent dimethyl sulfone monooxygenase [KO:K17228] [EC:1.14.14.35]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rer00260  Glycine, serine and threonine metabolism
rer00270  Cysteine and methionine metabolism
rer00680  Methane metabolism
rer00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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