KEGG   PATHWAY: rsm00920
Entry
rsm00920                    Pathway                                
Name
Sulfur metabolism - Ralstonia solanacearum CMR15
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
rsm00920  Sulfur metabolism
rsm00920

Module
rsm_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rsm00920]
rsm_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:rsm00920]
Other DBs
GO: 0006790
Organism
Ralstonia solanacearum CMR15 [GN:rsm]
Gene
CMR15_20548  cysP; thiosulfate transport protein; ABC superfamily, periplasmic and binding component [KO:K23163]
CMR15_20557  cysT; thiosulfate transport protein; ABC superfamily, membrane component [KO:K02046]
CMR15_20558  cysW; thiosulfate transport protein; ABC superfamily, membrane component [KO:K02047]
CMR15_20559  cysA; thiosulfate transport protein; ABC transporter, ATP-binding component [KO:K02045] [EC:7.3.2.3]
CMR15_20550  ssuA; alkanesulfonates binding signal peptide protein [KO:K15553]
CMR15_mp30041  ssuA; alkanesulfonate transporter subunit; periplasmic-binding component of ABC superfamily [KO:K15553]
CMR15_10078  putative ABC transporter, periplasmic-binding component [KO:K15553]
CMR15_20403  putative ABC transporter, periplasmic-binding component [KO:K15553]
CMR15_mp30153  putative ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components (tauA) [KO:K15553]
CMR15_20552  ssuC; alkanesulfonate transport protein; ABC superfamily, membrane component [KO:K15554]
CMR15_mp30152  Binding-protein-dependent transport systems (glycine betaine and nitrate/sulfonate/bicarbonate) inner membrane component, ABC transporter, permease protein [KO:K15554]
CMR15_20405  putative ABC-type transport system, permease component [KO:K15554]
CMR15_20553  ssuB; Aliphatic sulfonates import ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CMR15_mp30151  tauB; Taurine-transporting ATPase, ABC transporter, atp_binding component [KO:K15555] [EC:7.6.2.14]
CMR15_20404  putative ABC-type multidrug transport system, ATPase component [KO:K15555] [EC:7.6.2.14]
CMR15_20551  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CMR15_20549  ssuE; NAD(P)H-dependent FMN reductase, sulfate starvation-induced protein [KO:K00299] [EC:1.5.1.38]
CMR15_10957  cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) [KO:K00956] [EC:2.7.7.4]
CMR15_10956  cysD; ATP-sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) [KO:K00957] [EC:2.7.7.4]
CMR15_10226  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CMR15_mp10135  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CMR15_10955  cysH; Phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
CMR15_30083  sorA; cytrochrome C oxidoreductase subunit A [KO:K05301] [EC:1.8.2.1]
CMR15_10211  putative cytochrome of the thiosulfate-oxidizing multi-enzyme system, soxA homolog [KO:K17222] [EC:2.8.5.2]
CMR15_10212  putative cytochrome of the thiosulfate-oxidizing multi-enzyme system, soxX homolog [KO:K17223] [EC:2.8.5.2]
CMR15_10208  soxY; Sulphur oxidation protein [KO:K17226]
CMR15_10209  soxZ; Sulfur oxidation protein [KO:K17227]
CMR15_10214  putative 5'-nucleotidase, soxB homolog [KO:K17224] [EC:3.1.6.20]
CMR15_10953  cysI; Sulfite reductase, beta subunit (hemoprotein) [KO:K00381] [EC:1.8.1.2]
CMR15_20700  cysI; Sulfite reductase (ferredoxin), beta subunit (hemoprotein) [KO:K00381] [EC:1.8.1.2]
CMR15_11496  putative nad(Fad)-dependent dehydrogenase [KO:K17218] [EC:1.8.5.4]
CMR15_10205  soxF; Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain precursor [KO:K17229] [EC:1.8.2.3]
CMR15_10204  putative cytochrome c, soxE homolog [KO:K17230]
CMR15_11151  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CMR15_20368  cysE; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
CMR15_mp10252  cysK; Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) [KO:K01738] [EC:2.5.1.47]
CMR15_30882  metX; Homoserine 0-acetyltransferase protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
CMR15_mp10747  putative cystathionine beta-lyases protein (metB) [KO:K01739] [EC:2.5.1.48]
CMR15_11758  alkK; Medium-chain-fatty-acid-CoA ligase (Medium-chain acyl-CoA synthetase) [KO:K20034] [EC:6.2.1.44]
CMR15_20042  putative Butyryl-CoA dehydrogenase (bcd) [KO:K20035] [EC:1.3.99.41]
CMR15_30433  putative putative acyl-CoA dehydrogenase oxidoreductase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
rsm00260  Glycine, serine and threonine metabolism
rsm00270  Cysteine and methionine metabolism
rsm00680  Methane metabolism
rsm00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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