KEGG   PATHWAY: sad03430
Entry
sad03430                    Pathway                                
Name
Mismatch repair - Staphylococcus aureus subsp. aureus ED98
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
sad03430  Mismatch repair
sad03430

Other DBs
GO: 0006298
Organism
Staphylococcus aureus subsp. aureus ED98 [GN:sad]
Gene
SAAV_1270  hexA; DNA mismatch repair protein MutS [KO:K03555]
SAAV_1111  recombination and DNA strand exchange inhibitor protein [KO:K07456]
SAAV_1271  mutL; DNA mismatch repair protein [KO:K03572]
SAAV_1971  pcrA; ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
SAAV_1516  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
SAAV_1515  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
SAAV_1629  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
SAAV_0334  ssb2; single-stranded DNA-binding protein [KO:K03111]
SAAV_0835  ssb1; single-stranded DNA binding protein [KO:K03111]
SAAV_2152  single-stranded DNA-binding protein family [KO:K03111]
SAAV_1712  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
SAAV_1239  polC; DNA polymerase III PolC [KO:K03763] [EC:2.7.7.7]
SAAV_0002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
SAAV_0422  dnaX; DNA polymerase III, gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
SAAV_1578  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
SAAV_0430  DNA polymerase III, delta prime subunit, putative [KO:K02341] [EC:2.7.7.7]
SAAV_1960  exonuclease [KO:K02342] [EC:2.7.7.7]
SAAV_1970  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
SAAV_0820  putative methylase [KO:K06223] [EC:2.1.1.72]
SAAV_0819  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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