PATHWAY: scol01100 Help Entry scol01100                   Pathway                                 Name Metabolic pathways - Siccibacter colletis Class BRITE hierarchy Pathway map scol01100   Metabolic pathways Module scol_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:scol01100] scol_M00002   Glycolysis, core module involving three-carbon compounds [PATH:scol01100] scol_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:scol01100] scol_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:scol01100] scol_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:scol01100] scol_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:scol01100] scol_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:scol01100] scol_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:scol01100] scol_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:scol01100] scol_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:scol01100] scol_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:scol01100] scol_M00012   Glyoxylate cycle [PATH:scol01100] scol_M00015   Proline biosynthesis, glutamate => proline [PATH:scol01100] scol_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:scol01100] scol_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:scol01100] scol_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:scol01100] scol_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:scol01100] scol_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:scol01100] scol_M00021   Cysteine biosynthesis, serine => cysteine [PATH:scol01100] scol_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:scol01100] scol_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:scol01100] scol_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:scol01100] scol_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:scol01100] scol_M00026   Histidine biosynthesis, PRPP => histidine [PATH:scol01100] scol_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:scol01100] scol_M00034   Methionine salvage pathway [PATH:scol01100] scol_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:scol01100] scol_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:scol01100] scol_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:scol01100] scol_M00051   De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:scol01100] scol_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:scol01100] scol_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scol01100] scol_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:scol01100] scol_M00061   D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:scol01100] scol_M00063   CMP-KDO biosynthesis [PATH:scol01100] scol_M00064   ADP-L-glycero-D-manno-heptose biosynthesis [PATH:scol01100] scol_M00082   Fatty acid biosynthesis, initiation [PATH:scol01100] scol_M00083   Fatty acid biosynthesis, elongation [PATH:scol01100] scol_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:scol01100] scol_M00087   beta-Oxidation [PATH:scol01100] scol_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:scol01100] scol_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:scol01100] scol_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:scol01100] scol_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:scol01100] scol_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:scol01100] scol_M00119   Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:scol01100] scol_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:scol01100] scol_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:scol01100] scol_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:scol01100] scol_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:scol01100] scol_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:scol01100] scol_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:scol01100] scol_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:scol01100] scol_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:scol01100] scol_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:scol01100] scol_M00149   Succinate dehydrogenase, prokaryotes [PATH:scol01100] scol_M00150   Fumarate reductase, prokaryotes [PATH:scol01100] scol_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:scol01100] scol_M00168   CAM (Crassulacean acid metabolism), dark [PATH:scol01100] scol_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:scol01100] scol_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:scol01100] scol_M00338   Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:scol01100] scol_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:scol01100] scol_M00417   Cytochrome o ubiquinol oxidase [PATH:scol01100] scol_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:scol01100] scol_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:scol01100] scol_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:scol01100] scol_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:scol01100] scol_M00552   D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH:scol01100] scol_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:scol01100] scol_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:scol01100] scol_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:scol01100] scol_M00572   Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:scol01100] scol_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:scol01100] scol_M00621   Glycine cleavage system [PATH:scol01100] scol_M00631   D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:scol01100] scol_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:scol01100] scol_M00844   Arginine biosynthesis, ornithine => arginine [PATH:scol01100] scol_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:scol01100] scol_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:scol01100] scol_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:scol01100] scol_M00879   Arginine succinyltransferase pathway, arginine => glutamate [PATH:scol01100] scol_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:scol01100] scol_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:scol01100] scol_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:scol01100] scol_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:scol01100] scol_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:scol01100] scol_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:scol01100] scol_M00970   Proline degradation, proline => glutamate [PATH:scol01100] Organism Siccibacter colletis [GN:scol] Related pathway scol00010   Glycolysis / Gluconeogenesis scol00020   Citrate cycle (TCA cycle) scol00030   Pentose phosphate pathway scol00040   Pentose and glucuronate interconversions scol00051   Fructose and mannose metabolism scol00052   Galactose metabolism scol00053   Ascorbate and aldarate metabolism scol00061   Fatty acid biosynthesis scol00071   Fatty acid degradation scol00130   Ubiquinone and other terpenoid-quinone biosynthesis scol00190   Oxidative phosphorylation scol00220   Arginine biosynthesis scol00230   Purine metabolism scol00240   Pyrimidine metabolism scol00250   Alanine, aspartate and glutamate metabolism scol00260   Glycine, serine and threonine metabolism scol00261   Monobactam biosynthesis scol00270   Cysteine and methionine metabolism scol00280   Valine, leucine and isoleucine degradation scol00290   Valine, leucine and isoleucine biosynthesis scol00300   Lysine biosynthesis scol00310   Lysine degradation scol00330   Arginine and proline metabolism scol00332   Carbapenem biosynthesis scol00340   Histidine metabolism scol00350   Tyrosine metabolism scol00360   Phenylalanine metabolism scol00361   Chlorocyclohexane and chlorobenzene degradation scol00362   Benzoate degradation scol00364   Fluorobenzoate degradation scol00380   Tryptophan metabolism scol00400   Phenylalanine, tyrosine and tryptophan biosynthesis scol00401   Novobiocin biosynthesis scol00410   beta-Alanine metabolism scol00430   Taurine and hypotaurine metabolism scol00450   Selenocompound metabolism scol00460   Cyanoamino acid metabolism scol00470   D-Amino acid metabolism scol00480   Glutathione metabolism scol00500   Starch and sucrose metabolism scol00511   Other glycan degradation scol00520   Amino sugar and nucleotide sugar metabolism scol00521   Streptomycin biosynthesis scol00523   Polyketide sugar unit biosynthesis scol00525   Acarbose and validamycin biosynthesis scol00540   Lipopolysaccharide biosynthesis scol00541   O-Antigen nucleotide sugar biosynthesis scol00542   O-Antigen repeat unit biosynthesis scol00543   Exopolysaccharide biosynthesis scol00550   Peptidoglycan biosynthesis scol00552   Teichoic acid biosynthesis scol00561   Glycerolipid metabolism scol00562   Inositol phosphate metabolism scol00564   Glycerophospholipid metabolism scol00565   Ether lipid metabolism scol00592   alpha-Linolenic acid metabolism scol00600   Sphingolipid metabolism scol00620   Pyruvate metabolism scol00623   Toluene degradation scol00625   Chloroalkane and chloroalkene degradation scol00626   Naphthalene degradation scol00627   Aminobenzoate degradation scol00630   Glyoxylate and dicarboxylate metabolism scol00633   Nitrotoluene degradation scol00640   Propanoate metabolism scol00650   Butanoate metabolism scol00660   C5-Branched dibasic acid metabolism scol00670   One carbon pool by folate scol00680   Methane metabolism scol00710   Carbon fixation by Calvin cycle scol00720   Other carbon fixation pathways scol00730   Thiamine metabolism scol00740   Riboflavin metabolism scol00750   Vitamin B6 metabolism scol00760   Nicotinate and nicotinamide metabolism scol00770   Pantothenate and CoA biosynthesis scol00780   Biotin metabolism scol00785   Lipoic acid metabolism scol00790   Folate biosynthesis scol00791   Atrazine degradation scol00860   Porphyrin metabolism scol00900   Terpenoid backbone biosynthesis scol00906   Carotenoid biosynthesis scol00907   Pinene, camphor and geraniol degradation scol00910   Nitrogen metabolism scol00920   Sulfur metabolism scol00930   Caprolactam degradation scol00946   Degradation of flavonoids scol00999   Biosynthesis of various plant secondary metabolites scol01040   Biosynthesis of unsaturated fatty acids scol01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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