KEGG   PATHWAY: scol00230
Entry
scol00230                   Pathway                                
Name
Purine metabolism - Siccibacter colletis
Class
Metabolism; Nucleotide metabolism
Pathway map
scol00230  Purine metabolism
scol00230

Module
scol_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:scol00230]
scol_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:scol00230]
scol_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:scol00230]
scol_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:scol00230]
scol_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:scol00230]
scol_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:scol00230]
Other DBs
GO: 0006163 0042278
Organism
Siccibacter colletis [GN:scol]
Gene
KFZ77_02975  nudF; ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
KFZ77_01425  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
KFZ77_16530  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
KFZ77_05585  pgm; phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) [KO:K01835] [EC:5.4.2.2]
KFZ77_11025  prs; ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
KFZ77_13690  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
KFZ77_17930  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
KFZ77_14225  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
KFZ77_11645  purT; formate-dependent phosphoribosylglycinamide formyltransferase [KO:K08289] [EC:6.3.1.21]
KFZ77_14475  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
KFZ77_14220  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
KFZ77_04965  purK; 5-(carboxyamino)imidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
KFZ77_04970  purE; 5-(carboxyamino)imidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
KFZ77_14155  purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
KFZ77_07555  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
KFZ77_17925  purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
KFZ77_04810  apt; adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
KFZ77_04865  bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
KFZ77_15525  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
KFZ77_05520  HAD-IIA family hydrolase [KO:K02566] [EC:3.1.3.5]
KFZ77_01415  yrfG; GMP/IMP nucleotidase [KO:K20881] [EC:3.1.3.-]
KFZ77_04850  inosine/guanosine kinase [KO:K00892] [EC:2.7.1.73]
KFZ77_16970  xapA; xanthosine phosphorylase [KO:K03783] [EC:2.4.2.1]
KFZ77_16525  deoD; purine-nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
KFZ77_04365  ppnP; pyrimidine/purine nucleoside phosphorylase [KO:K09913] [EC:2.4.2.1 2.4.2.2]
KFZ77_14665  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
KFZ77_03685  hpt; hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
KFZ77_14255  guaB; IMP dehydrogenase [KO:K00088] [EC:1.1.1.205]
KFZ77_14315  ndk; nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
KFZ77_16445  yjjX; inosine/xanthosine triphosphatase [KO:K01529] [EC:3.6.1.73]
KFZ77_16355  XTP/dITP diphosphatase [KO:K01519] [EC:3.6.1.66]
KFZ77_04130  gpt; xanthine phosphoribosyltransferase [KO:K00769] [EC:2.4.2.22]
KFZ77_00285  xanthine dehydrogenase family protein molybdopterin-binding subunit [KO:K11177] [EC:1.17.1.4]
KFZ77_00280  xanthine dehydrogenase family protein subunit M [KO:K11178] [EC:1.17.1.4]
KFZ77_00275  paoA; aldehyde dehydrogenase iron-sulfur subunit [KO:K13483]
KFZ77_14250  guaA; glutamine-hydrolyzing GMP synthase [KO:K01951] [EC:6.3.5.2]
KFZ77_03570  GMP reductase [KO:K00364] [EC:1.7.1.7]
KFZ77_18530  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
KFZ77_13410  nrdA; ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
KFZ77_15090  nrdE; class 1b ribonucleoside-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
KFZ77_13415  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
KFZ77_15095  nrdF; class 1b ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
KFZ77_16940  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
KFZ77_03815  dgt; dGTPase [KO:K01129] [EC:3.1.5.1]
KFZ77_13590  yfbR; 5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
KFZ77_18540  spoT; bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
KFZ77_19095  gppA; guanosine-5'-triphosphate,3'-diphosphate diphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
KFZ77_14235  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
KFZ77_15625  relA; GTP diphosphokinase [KO:K00951] [EC:2.7.6.5]
KFZ77_18970  cyaA; class I adenylate cyclase [KO:K05851] [EC:4.6.1.1]
KFZ77_17265  adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
KFZ77_08515  add; adenosine deaminase [KO:K01488] [EC:3.5.4.4]
KFZ77_12520  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
KFZ77_15680  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
KFZ77_17135  bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
KFZ77_04835  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
KFZ77_15620  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
KFZ77_02985  cpdA; 3',5'-cyclic-AMP phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KFZ77_15345  phosphodiesterase [KO:K03651] [EC:3.1.4.53]
KFZ77_03300  apaH; bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH [KO:K01525] [EC:3.6.1.41]
KFZ77_15555  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
KFZ77_15560  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
KFZ77_15565  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
KFZ77_00245  hiuH; hydroxyisourate hydrolase [KO:K07127] [EC:3.5.2.17]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
scol00030  Pentose phosphate pathway
scol00220  Arginine biosynthesis
scol00250  Alanine, aspartate and glutamate metabolism
scol00260  Glycine, serine and threonine metabolism
scol00340  Histidine metabolism
scol00630  Glyoxylate and dicarboxylate metabolism
scol00730  Thiamine metabolism
scol00740  Riboflavin metabolism
scol00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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