KEGG   PATHWAY: sdy00740
Entry
sdy00740                    Pathway                                
Name
Riboflavin metabolism - Shigella dysenteriae Sd197
Class
Metabolism; Metabolism of cofactors and vitamins
Pathway map
sdy00740  Riboflavin metabolism
sdy00740

Module
sdy_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:sdy00740]
Other DBs
GO: 0006771
Organism
Shigella dysenteriae Sd197 [GN:sdy]
Gene
SDY_1353  ribA; GTP cyclohydrolase II [KO:K01497] [EC:3.5.4.25]
SDY_0320  ribD; bifunctional pyrimidine deaminase/reductase [KO:K11752] [EC:3.5.4.26 1.1.1.193]
SDY_3933  yigB; putative phosphatase [KO:K20862] [EC:3.1.3.102 3.1.3.104]
SDY_3226  ribB; 3,4 dihydroxy-2-butanone-4-phosphate synthase [KO:K02858] [EC:4.1.99.12]
SDY_0319  ribH; riboflavin synthase, beta chain [KO:K00794] [EC:2.5.1.78]
SDY_1888  ribE; riboflavin synthase, alpha chain [KO:K00793] [EC:2.5.1.9]
SDY_0047  ribF; putative regulator [KO:K11753] [EC:2.7.1.26 2.7.7.2]
SDY_0956  appA; phosphoanhydride phosphorylase [KO:K01093] [EC:3.1.3.26 3.1.3.2]
SDY_P067  phoN1; PhoN1 [KO:K09474] [EC:3.1.3.2]
SDY_P004  phoN2_apy; PhoN2/Apy [KO:K09474] [EC:3.1.3.2]
SDY_3901  ubiB; ferrisiderophore reductase [KO:K05368] [EC:1.5.1.41]
SDY_2319  ycbP; conserved hypothetical protein [KO:K00299] [EC:1.5.1.38]
SDY_2278  thiM; hydoxyethylthiazole kinase [KO:K00878] [EC:2.7.1.50]
SDY_3206  yqiE; conserved hypothetical protein [KO:K01515] [EC:3.6.1.13 3.6.1.-]
SDY_2018  putative phosphohydrolase [KO:K12152] [EC:3.6.1.-]
SDY_2510  ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [KO:K03186] [EC:2.5.1.129]
SDY_2938  phenylacrylic acid decarboxylase-like protein [KO:K03186] [EC:2.5.1.129]
Compound
C00016  FAD
C00044  GTP
C00061  FMN
C00199  D-Ribulose 5-phosphate
C00235  Dimethylallyl diphosphate
C00255  Riboflavin
C00474  Ribitol
C01007  Reduced riboflavin
C01268  5-Amino-6-(5'-phosphoribosylamino)uracil
C01304  2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
C01352  FADH2
C01390  Prenol
C01727  Lumichrome
C01847  Reduced FMN
C03114  Dimethylbenzimidazole
C04332  6,7-Dimethyl-8-(D-ribityl)lumazine
C04454  5-Amino-6-(5'-phospho-D-ribitylamino)uracil
C04732  5-Amino-6-(1-D-ribitylamino)uracil
C05995  7-Hydroxy-6-methyl-8-ribityllumazine
C15556  L-3,4-Dihydroxybutan-2-one 4-phosphate
C15563  2-Amino-5-formylamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one
C18910  2,5-Diamino-6-(5-phospho-D-ribitylamino)pyrimidin-4(3H)-one
C21214  Dimethylallyl phosphate
C21215  Prenylated FMNH2
Reference
PMID:12136096
  Authors
Vitreschak AG, Rodionov DA, Mironov AA, Gelfand MS.
  Title
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.
  Journal
Nucleic Acids Res 30:3141-51 (2002)
DOI:10.1093/nar/30.14.3141
Reference
PMID:11856310
  Authors
Fischer M, Haase I, Feicht R, Richter G, Gerhardt S, Changeux JP, Huber R, Bacher A.
  Title
Biosynthesis of riboflavin: 6,7-dimethyl-8-ribityllumazine synthase of Schizosaccharomyces pombe.
  Journal
Eur J Biochem 269:519-26 (2002)
DOI:10.1046/j.0014-2956.2001.02674.x
Reference
PMID:12867427
  Authors
Haase I, Fischer M, Bacher A, Schramek N.
  Title
Temperature-dependent presteady state kinetics of lumazine synthase from the hyperthermophilic eubacterium Aquifex aeolicus.
  Journal
J Biol Chem 278:37909-15 (2003)
DOI:10.1074/jbc.M303090200
Reference
PMID:16042598
  Authors
Fischer M, Romisch W, Illarionov B, Eisenreich W, Bacher A.
  Title
Structures and reaction mechanisms of riboflavin synthases of eubacterial and archaeal origin.
  Journal
Biochem Soc Trans 33:780-4 (2005)
DOI:10.1042/BST0330780
Related
pathway
sdy00030  Pentose phosphate pathway
sdy00040  Pentose and glucuronate interconversions
sdy00230  Purine metabolism
sdy00860  Porphyrin metabolism
sdy00900  Terpenoid backbone biosynthesis
KO pathway
ko00740   
LinkDB

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