KEGG   PATHWAY: see03030
Entry
see03030                    Pathway                                
Name
DNA replication - Salmonella enterica subsp. enterica serovar Newport SL254
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
see03030  DNA replication
see03030

Organism
Salmonella enterica subsp. enterica serovar Newport SL254 [GN:see]
Gene
SNSL254_A2035  conserved domain protein [KO:K02345] [EC:2.7.7.7]
SNSL254_A0289  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
SNSL254_p_0181  putative exonuclease [KO:K02342] [EC:2.7.7.7]
SNSL254_A0253  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
SNSL254_A0534  dnaX; DNA polymerase III, tau subunit [KO:K02343] [EC:2.7.7.7]
SNSL254_A1300  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
SNSL254_A0703  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
SNSL254_A4913  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
SNSL254_A4825  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
SNSL254_A4122  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
SNSL254_A1140  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SNSL254_A4589  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
SNSL254_A3470  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
SNSL254_A4599  ssb2; single-stranded DNA-binding protein [KO:K03111]
SNSL254_p_0108  ssb; single-strand DNA-binding protein [KO:K03111]
SNSL254_A0288  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
SNSL254_A0252  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
SNSL254_A4281  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
SNSL254_A2620  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
SNSL254_A4019  ligA; NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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