KEGG   PATHWAY: sef03430
Entry
sef03430                    Pathway                                
Name
Mismatch repair - Salmonella enterica subsp. enterica serovar Typhimurium 798
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
sef03430  Mismatch repair
sef03430

Other DBs
GO: 0006298
Organism
Salmonella enterica subsp. enterica serovar Typhimurium 798 [GN:sef]
Gene
UMN798_3157  mutS; DNA mismatch repair protein [KO:K03555]
UMN798_4720  mutL; DNA mismatch repair protein [KO:K03572]
UMN798_3265  mutH; DNA mismatch repair protein mutH [KO:K03573]
UMN798_4289  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
UMN798_2233  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
UMN798_2707  xseA; putative exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
UMN798_0467  xseB; exodeoxyribonuclease small subunit [KO:K03602] [EC:3.1.11.6]
UMN798_1978  exoX; exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
UMN798_3306  recJ; single-stranded DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
UMN798_4614  ssb; single-strand DNA-binding protein [KO:K03111]
UMN798_p0079  ssbB; single-strand DNA binding protein [KO:K03111]
UMN798_0252  dnaE; DNA polymerase III, alpha chain [KO:K02337] [EC:2.7.7.7]
UMN798_4172  dnaN; DNA polymerase III beta-subunit [KO:K02338] [EC:2.7.7.7]
UMN798_0528  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
UMN798_0699  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
UMN798_1248  holB; DNA polymerase III, delta' subunit [KO:K02341] [EC:2.7.7.7]
UMN798_0288  dnaQ; DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
UMN798_1976  holE; DNA polymerase III, theta subunit [KO:K02345] [EC:2.7.7.7]
UMN798_p0077  putative inner membrane protein [KO:K02345] [EC:2.7.7.7]
UMN798_4846  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
UMN798_4928  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
UMN798_4061  putative DNA ligase [KO:K01972] [EC:6.5.1.2]
UMN798_2951  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
UMN798_3786  dam; DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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