KEGG   PATHWAY: sfw03030
Entry
sfw03030                    Pathway                                
Name
DNA replication - Serratia fonticola DSM 4576
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sfw03030  DNA replication
sfw03030

Organism
Serratia fonticola DSM 4576 [GN:sfw]
Gene
WN53_23330  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
WN53_24950  DNA polymerase II [KO:K02345] [EC:2.7.7.7]
WN53_13365  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
WN53_01670  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
WN53_14510  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
WN53_19250  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
WN53_15405  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
WN53_11555  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
WN53_11045  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
WN53_08000  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
WN53_05400  DNA helicase [KO:K02314] [EC:5.6.2.3]
WN53_03655  DNA helicase [KO:K02314] [EC:5.6.2.3]
WN53_04390  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
WN53_05360  single-stranded DNA-binding protein [KO:K03111]
WN53_13360  ribonuclease H [KO:K03469] [EC:3.1.26.4]
WN53_01675  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
WN53_07595  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
WN53_07455  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
WN53_26550  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system