KEGG   PATHWAY: snig02010
Entry
snig02010                   Pathway                                
Name
ABC transporters - Streptomyces nigrescens
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
snig02010  ABC transporters
snig02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Streptomyces nigrescens [GN:snig]
Gene
HEK616_25640  ABC transporter substrate-binding protein [KO:K15553]
HEK616_38900  putative nitrate ABC transporter, periplasmic protein [KO:K15553]
HEK616_43770  ssuA; ABC transporter substrate-binding protein [KO:K15553]
HEK616_49940  lipoprotein [KO:K15553]
HEK616_49960  sulfate ABC transporter permease [KO:K15554]
HEK616_25630  ssuC_1; ABC transporter permease [KO:K15554]
HEK616_43750  ssuC_2; ABC transporter permease [KO:K15554]
HEK616_25620  ssuB; mannosyltransferase [KO:K15555] [EC:7.6.2.14]
HEK616_38920  hypothetical protein [KO:K15555] [EC:7.6.2.14]
HEK616_43760  hypothetical protein [KO:K15555] [EC:7.6.2.14]
HEK616_49950  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HEK616_24780  modA; molybdate-binding protein [KO:K02020]
HEK616_24790  hypothetical protein [KO:K02017 K02018] [EC:7.3.2.5]
HEK616_54040  thiamine ABC transporter substrate-binding protein [KO:K02064]
HEK616_54030  iron ABC transporter permease [KO:K02063]
HEK616_54020  fbpC; Fe(3+) ions import ATP-binding protein FbpC [KO:K02062] [EC:7.6.2.15]
HEK616_53850  ABC transporter substrate-binding protein [KO:K11069]
HEK616_53900  polyamine-binding lipoprotein [KO:K11069]
HEK616_53820  ABC transporter permease [KO:K11070]
HEK616_53830  ABC transporter permease [KO:K11071]
HEK616_53840  polyamine-transporting ATPase [KO:K11072] [EC:7.6.2.11]
HEK616_05090  2-aminoethylphosphonate ABC transporter substrate-binding protein [KO:K11081]
HEK616_05080  phosphonate ABC transporter permease [KO:K11082]
HEK616_05070  2-aminoethylphosphonate ABC transporter permease [KO:K11083]
HEK616_05060  ABC transporter ATP-binding protein [KO:K11084]
HEK616_61980  glycine/betaine-binding protein [KO:K02002]
HEK616_19380  glycine/betaine ABC transporter permease [KO:K02001 K02002]
HEK616_61990  glycine/betaine ABC transporter permease [KO:K02001]
HEK616_62010  glycine/betaine ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
HEK616_19370  glycine/betaine ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
HEK616_02860  glycine/betaine ABC transporter substrate-binding protein [KO:K05845]
HEK616_04380  glycine/betaine ABC transporter substrate-binding protein [KO:K05845]
HEK616_65780  glycine/betaine ABC transporter substrate-binding protein [KO:K05845]
HEK616_70650  proX; glycine/betaine ABC transporter substrate-binding protein [KO:K05845]
HEK616_36180  glycine/betaine ABC transporter substrate-binding protein [KO:K05845]
HEK616_02870  proW; glycine/betaine ABC transporter permease [KO:K05846]
HEK616_02880  ABC transporter permease [KO:K05846]
HEK616_04390  permease [KO:K05846]
HEK616_04410  ABC transporter permease [KO:K05846]
HEK616_65790  ABC transporter permease [KO:K05846]
HEK616_65800  glycine/betaine ABC transporter permease [KO:K05846]
HEK616_70630  hypothetical protein [KO:K05846]
HEK616_70640  ABC transporter permease [KO:K05846]
HEK616_36190  hypothetical protein [KO:K05846]
HEK616_02890  proline/glycine betaine ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
HEK616_04400  ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
HEK616_70660  ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
HEK616_63930  ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
HEK616_30530  sugar ABC transporter ATP-binding protein [KO:K10112] [EC:7.5.2.-]
HEK616_12570  sugar ABC transporter substrate-binding protein [KO:K15770]
HEK616_12580  ABC transporter permease [KO:K15771]
HEK616_12590  ABC transporter permease [KO:K15772]
HEK616_22530  sugar ABC transporter substrate-binding protein [KO:K10227]
HEK616_22520  sugar ABC transporter permease [KO:K10228]
HEK616_22510  mannitol ABC transporter permease [KO:K10229]
HEK616_27630  sugar ABC transporter substrate-binding protein [KO:K10232]
HEK616_04020  sugar ABC transporter substrate-binding protein [KO:K10232]
HEK616_04000  ABC transporter permease [KO:K10233]
HEK616_27620  ABC transporter permease [KO:K10233]
HEK616_03990  sugar ABC transporter permease [KO:K10234]
HEK616_27610  sugar ABC transporter permease [KO:K10234]
HEK616_27650  ABC transporter substrate-binding protein [KO:K10236]
HEK616_30520  ABC transporter substrate-binding protein [KO:K10236]
HEK616_16280  hypothetical protein [KO:K10236]
HEK616_30510  ABC transporter permease [KO:K10237]
HEK616_30500  ABC transporter permease [KO:K10238]
HEK616_50780  carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein [KO:K10200]
HEK616_50770  sugar ABC transporter permease [KO:K10201]
HEK616_50760  sugar ABC transporter permease [KO:K10202]
HEK616_58270  sugar transporter [KO:K17329]
HEK616_58260  sugar ABC transporter permease [KO:K17330]
HEK616_58250  sugar ABC transporter permease [KO:K17331]
HEK616_41730  solute-binding protein [KO:K17244]
HEK616_41740  ABC transporter permease [KO:K17245]
HEK616_41750  ABC transporter permease [KO:K17246]
HEK616_75670  sugar ABC transporter substrate-binding protein [KO:K10546]
HEK616_75650  ABC transporter permease [KO:K10547]
HEK616_75660  xylose ABC transporter ATP-binding protein [KO:K10548] [EC:7.5.2.-]
HEK616_61350  lipoprotein [KO:K07335]
HEK616_61330  ABC transporter permease [KO:K23535]
HEK616_61320  ABC transporter permease [KO:K23536]
HEK616_61340  sugar ABC transporter ATP-binding protein [KO:K23537]
HEK616_10710  hypothetical protein [KO:K10439 K10440]
HEK616_18900  ABC transporter substrate-binding protein [KO:K10439]
HEK616_43690  sugar ABC transporter substrate-binding protein [KO:K10439]
HEK616_10700  rbsA2; ribose import ATP-binding protein RbsA 2 [KO:K10441] [EC:7.5.2.7]
HEK616_50740  solute-binding protein [KO:K10543]
HEK616_26060  solute-binding protein [KO:K10543]
HEK616_43010  solute-binding protein [KO:K10543]
HEK616_50710  ABC transporter permease [KO:K10544]
HEK616_26040  ABC transporter permease [KO:K10544]
HEK616_50720  ABC transporter ATP-binding protein [KO:K10545] [EC:7.5.2.10]
HEK616_26050  ABC transporter ATP-binding protein [KO:K10545] [EC:7.5.2.10]
HEK616_64790  phosphate-binding protein PstS [KO:K02040]
HEK616_08440  phosphate-binding protein [KO:K02040]
HEK616_64800  phosphate transport system permease protein [KO:K02037]
HEK616_64810  phosphate transport system permease protein PstA [KO:K02038]
HEK616_64820  pstB; phosphate import ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
HEK616_81680  glutamine ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
HEK616_52920  ABC transporter substrate-binding protein [KO:K10005]
HEK616_12040  glutamate-binding protein [KO:K10005]
HEK616_48140  ABC transporter substrate-binding protein [KO:K10005]
HEK616_52930  amino acid ABC transporter permease [KO:K10006]
HEK616_48130  amino acid ABC transporter permease [KO:K10006]
HEK616_52940  amino acid ABC transporter permease [KO:K10007]
HEK616_48120  amino acid ABC transporter permease [KO:K10007]
HEK616_52910  arginine ABC transporter ATP-binding protein [KO:K10008] [EC:7.4.2.1]
HEK616_48150  arginine ABC transporter ATP-binding protein [KO:K10008] [EC:7.4.2.1]
HEK616_62750  lipoprotein [KO:K01999]
HEK616_15080  branched chain amino acid ABC transporter substrate-binding protein [KO:K01999]
HEK616_15070  branched-chain amino acid ABC transporter permease [KO:K01997]
HEK616_15060  branched-chain amino acid ABC transporter permease [KO:K01998]
HEK616_15050  ABC transporter ATP-binding protein [KO:K01995]
HEK616_15040  ABC transporter ATP-binding protein [KO:K01996]
HEK616_20030  lipoprotein [KO:K02073]
HEK616_20020  ABC transporter permease [KO:K02072]
HEK616_20010  metN; methionine import ATP-binding protein MetN [KO:K02071]
HEK616_59520  peptide ABC transporter substrate-binding protein [KO:K15580]
HEK616_59510  ABC transporter permease [KO:K15581]
HEK616_59500  peptide ABC transporter permease [KO:K15582]
HEK616_59490  ABC transporter ATP-binding protein [KO:K15583]
HEK616_59480  ABC transporter ATP-binding protein [KO:K10823]
HEK616_17060  ABC transporter substrate-binding protein [KO:K25287]
HEK616_47880  hypothetical protein [KO:K25287]
HEK616_63380  ABC transporter periplasmic component [KO:K25286]
HEK616_63350  iron ABC transporter permease [KO:K23186]
HEK616_17070  iron ABC transporter permease [KO:K23186]
HEK616_63360  ABC transporter permease [KO:K23187]
HEK616_17080  ABC transporter permease [KO:K23187]
HEK616_63370  cobalamin/Fe3+-siderophore ABC transporter ATP-binding protein [KO:K23188] [EC:7.2.2.17 7.2.2.-]
HEK616_17090  ABC transporter [KO:K23188] [EC:7.2.2.17 7.2.2.-]
HEK616_08970  zinc ABC transporter substrate-binding protein [KO:K09815]
HEK616_08950  ABC transporter [KO:K09816]
HEK616_27490  hypothetical protein [KO:K09816]
HEK616_08960  ABC transporter [KO:K09817] [EC:7.2.2.20]
HEK616_27480  ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
HEK616_01750  hypothetical protein [KO:K02007]
HEK616_01760  cobalt ECF transporter T component CbiQ [KO:K02008]
HEK616_01770  putative ABC transporter ATP-binding protein [KO:K02006]
HEK616_07640  biotin synthase [KO:K03523]
HEK616_11630  cobalt ABC transporter permease [KO:K16785]
HEK616_03850  transport permease protein [KO:K09692]
HEK616_45700  transport permease protein [KO:K09692]
HEK616_03840  ABC transporter ATP-binding protein [KO:K09693] [EC:7.5.2.4]
HEK616_45690  ABC transporter ATP-binding protein [KO:K09693] [EC:7.5.2.4]
HEK616_50380  ABC transporter substrate-binding protein [KO:K09813]
HEK616_50390  ABC transporter ATP-binding protein [KO:K09814] [EC:7.6.2.-]
HEK616_71060  transport permease protein [KO:K18233]
HEK616_12410  transport permease protein [KO:K18233]
HEK616_12420  daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein [KO:K18232]
HEK616_04110  cell division protein FtsX [KO:K09811]
HEK616_04100  cell division ATP-binding protein FtsE [KO:K09812]
HEK616_64380  multidrug ABC transporter ATP-binding protein [KO:K18887]
HEK616_64370  multidrug ABC transporter ATP-binding protein [KO:K18888]
HEK616_69000  ABC transporter [KO:K16014]
HEK616_52600  ABC transporter ATP-binding protein [KO:K18230]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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