KEGG   PATHWAY: spen00195
Entry
spen00195                   Pathway                                
Name
Photosynthesis - Solanum pennellii
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
spen00195  Photosynthesis
spen00195

Module
spen_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:spen00195]
spen_M00161  Photosystem II [PATH:spen00195]
spen_M00163  Photosystem I [PATH:spen00195]
Organism
Solanum pennellii [GN:spen]
Gene
34925861  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
34925877  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
34925874  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
34925944  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
34925909  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
34925884  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
34925906  psbH; photosystem II phosphoprotein [KO:K02709]
34925918  psbI; photosystem II protein I [KO:K02710]
34925839  psbJ; photosystem II protein J [KO:K02711]
34925952  psbK; photosystem II protein K [KO:K02712]
34925935  psbL; photosystem II protein L [KO:K02713]
34925922  psbM; photosystem II protein M [KO:K02714]
107025038  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
107010928  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
107010992  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
107025687  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
107014924  psbP-like protein 1, chloroplastic [KO:K02717]
107020625  photosynthetic NDH subunit of lumenal location 2, chloroplastic isoform X1 [KO:K08901]
107011098  oxygen-evolving enhancer protein 3, chloroplastic [KO:K08901]
107002658  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
107006640  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
107025836  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
107023373  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
34925936  psbT; photosystem II protein T [KO:K02718]
107021036  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
107031507  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
107002217  photosystem II core complex proteins psbY, chloroplastic [KO:K02723]
34925892  psbZ; photosystem II protein Z [KO:K02724]
107023962  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
107031497  photosystem II reaction center Psb28 protein [KO:K08903]
34925837  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
34925836  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
34925894  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
107023072  photosystem I reaction center subunit II, chloroplastic [KO:K02692]
107031163  photosystem I reaction center subunit IV B, chloroplastic [KO:K02693]
107023293  photosystem I reaction center subunit IV A, chloroplastic [KO:K02693]
107010906  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
107010907  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
107026325  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
107023091  photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
107007126  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
34925887  psaI; photosystem I subunit VIII [KO:K02696]
34925879  psaJ; photosystem I subunit IX [KO:K02697]
107028828  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
107022538  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
107022540  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
107028811  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
107023418  photosystem I subunit O [KO:K14332]
34925960  petA; cytochrome f [KO:K02634]
34925924  petB; cytochrome b6 [KO:K02635]
107007225  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
34925957  petD; cytochrome b6/f complex subunit IV [KO:K02637]
34925937  petG; cytochrome b6/f complex subunit V [KO:K02640]
34925911  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
107017609  plastocyanin, chloroplastic [KO:K02638]
107020296  ferredoxin, root R-B2 [KO:K02639]
107028445  ferredoxin C 2, chloroplastic [KO:K02639]
107002388  ferredoxin-1, chloroplastic [KO:K02639]
107004460  ferredoxin, root R-B2-like [KO:K02639]
107017484  ferredoxin, root R-B2-like [KO:K02639]
107032013  ferredoxin [KO:K02639]
107002934  ferredoxin, root R-B1-like [KO:K02639]
107015075  ferredoxin C 1, chloroplastic [KO:K02639]
107023405  uncharacterized protein LOC107023405 [KO:K02639]
107007346  ferredoxin-like [KO:K02639]
114074181  ferredoxin-1, chloroplastic-like [KO:K02639]
107011672  ferredoxin--NADP reductase, root-type isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
107008962  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic-like isoform X1 [KO:K02641] [EC:1.18.1.2]
107011119  ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
107009052  cytochrome c6, chloroplastic [KO:K08906]
34925844  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
34925939  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
107007189  ATP synthase gamma chain, chloroplastic-like isoform X1 [KO:K02115]
107011082  ATP synthase gamma chain, chloroplastic [KO:K02115]
34925920  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
107020682  ATP synthase subunit delta, chloroplastic [KO:K02113]
107006044  ATP synthase delta chain, chloroplastic [KO:K02113]
107023052  ATP synthase subunit b', chloroplastic [KO:K02109]
114077502  ATP synthase subunit b', chloroplastic-like [KO:K02109]
34926034  atp8; ATP synthase subunit 8 [KO:K02109]
34925965  atpF; ATP synthase CF0 subunit I [KO:K02109]
34925923  atpH; ATP synthase CF0 subunit III [KO:K02110]
34925913  atpI; ATP synthase CF0 subunit IV [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
spen00196  Photosynthesis - antenna proteins
spen00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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