KEGG   PATHWAY: sphx03030
Entry
sphx03030                   Pathway                                
Name
DNA replication - Sphingopyxis sp. PAMC25046
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
sphx03030  DNA replication
sphx03030

Organism
Sphingopyxis sp. PAMC25046 [GN:sphx]
Gene
E5675_20890  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
E5675_11240  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
E5675_13010  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
E5675_10690  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
E5675_20610  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
E5675_07005  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
E5675_13720  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
E5675_09190  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
E5675_04870  DNA primase [KO:K02316] [EC:2.7.7.101]
E5675_20490  ssb; single-stranded DNA-binding protein [KO:K03111]
E5675_09425  single-stranded DNA-binding protein [KO:K03111]
E5675_11485  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
E5675_03580  reverse transcriptase-like protein [KO:K03469] [EC:3.1.26.4]
E5675_12485  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
E5675_14420  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
E5675_18535  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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