KEGG   PATHWAY: ste03030
Entry
ste03030                    Pathway                                
Name
DNA replication - Streptococcus thermophilus LMD-9
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ste03030  DNA replication
ste03030

Organism
Streptococcus thermophilus LMD-9 [GN:ste]
Gene
STER_1165  DNA polymerase III catalytic subunit, DnaE type [KO:K02337] [EC:2.7.7.7]
STER_0095  DNA polymerase III catalytic subunit, PolC type [KO:K03763] [EC:2.7.7.7]
STER_1138  DNA polymerase III, tau subunit [KO:K02343] [EC:2.7.7.7]
STER_0527  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
STER_0761  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
STER_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
STER_1975  primary replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
STER_1449  DNA primase [KO:K02316] [EC:2.7.7.101]
STER_1727  Single-stranded DNA-binding protein [KO:K03111]
STER_1821  Single-stranded DNA-binding protein [KO:K03111]
STER_0920  RNase HII [KO:K03470] [EC:3.1.26.4]
STER_1740  Ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
STER_1736  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
STER_1513  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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