PATHWAY: swd01100 Help Entry swd01100                    Pathway                                 Name Metabolic pathways - Shewanella woodyi Class BRITE hierarchy Pathway map swd01100   Metabolic pathways Module swd_M00002   Glycolysis, core module involving three-carbon compounds [PATH:swd01100] swd_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:swd01100] swd_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:swd01100] swd_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:swd01100] swd_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:swd01100] swd_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:swd01100] swd_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:swd01100] swd_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:swd01100] swd_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:swd01100] swd_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:swd01100] swd_M00012   Glyoxylate cycle [PATH:swd01100] swd_M00015   Proline biosynthesis, glutamate => proline [PATH:swd01100] swd_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:swd01100] swd_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:swd01100] swd_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:swd01100] swd_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:swd01100] swd_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:swd01100] swd_M00021   Cysteine biosynthesis, serine => cysteine [PATH:swd01100] swd_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:swd01100] swd_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:swd01100] swd_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:swd01100] swd_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:swd01100] swd_M00026   Histidine biosynthesis, PRPP => histidine [PATH:swd01100] swd_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:swd01100] swd_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:swd01100] swd_M00036   Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:swd01100] swd_M00038   Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH:swd01100] swd_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:swd01100] swd_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:swd01100] swd_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:swd01100] swd_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:swd01100] swd_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:swd01100] swd_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:swd01100] swd_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:swd01100] swd_M00060   KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:swd01100] swd_M00063   CMP-KDO biosynthesis [PATH:swd01100] swd_M00083   Fatty acid biosynthesis, elongation [PATH:swd01100] swd_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:swd01100] swd_M00087   beta-Oxidation [PATH:swd01100] swd_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:swd01100] swd_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:swd01100] swd_M00116   Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:swd01100] swd_M00117   Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:swd01100] swd_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:swd01100] swd_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:swd01100] swd_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:swd01100] swd_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:swd01100] swd_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:swd01100] swd_M00124   Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:swd01100] swd_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:swd01100] swd_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:swd01100] swd_M00127   Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:swd01100] swd_M00133   Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH:swd01100] swd_M00140   C1-unit interconversion, prokaryotes [PATH:swd01100] swd_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:swd01100] swd_M00149   Succinate dehydrogenase, prokaryotes [PATH:swd01100] swd_M00151   Cytochrome bc1 complex respiratory unit [PATH:swd01100] swd_M00155   Cytochrome c oxidase, prokaryotes [PATH:swd01100] swd_M00156   Cytochrome c oxidase, cbb3-type [PATH:swd01100] swd_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:swd01100] swd_M00168   CAM (Crassulacean acid metabolism), dark [PATH:swd01100] swd_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:swd01100] swd_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:swd01100] swd_M00417   Cytochrome o ubiquinol oxidase [PATH:swd01100] swd_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:swd01100] swd_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:swd01100] swd_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:swd01100] swd_M00554   Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:swd01100] swd_M00555   Betaine biosynthesis, choline => betaine [PATH:swd01100] swd_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:swd01100] swd_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:swd01100] swd_M00621   Glycine cleavage system [PATH:swd01100] swd_M00632   Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:swd01100] swd_M00793   dTDP-L-rhamnose biosynthesis [PATH:swd01100] swd_M00844   Arginine biosynthesis, ornithine => arginine [PATH:swd01100] swd_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:swd01100] swd_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:swd01100] swd_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:swd01100] swd_M00912   NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:swd01100] swd_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:swd01100] swd_M00948   Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:swd01100] swd_M00970   Proline degradation, proline => glutamate [PATH:swd01100] Organism Shewanella woodyi [GN:swd] Related pathway swd00010   Glycolysis / Gluconeogenesis swd00020   Citrate cycle (TCA cycle) swd00030   Pentose phosphate pathway swd00040   Pentose and glucuronate interconversions swd00051   Fructose and mannose metabolism swd00052   Galactose metabolism swd00053   Ascorbate and aldarate metabolism swd00061   Fatty acid biosynthesis swd00071   Fatty acid degradation swd00121   Secondary bile acid biosynthesis swd00130   Ubiquinone and other terpenoid-quinone biosynthesis swd00190   Oxidative phosphorylation swd00220   Arginine biosynthesis swd00230   Purine metabolism swd00240   Pyrimidine metabolism swd00250   Alanine, aspartate and glutamate metabolism swd00260   Glycine, serine and threonine metabolism swd00261   Monobactam biosynthesis swd00270   Cysteine and methionine metabolism swd00280   Valine, leucine and isoleucine degradation swd00290   Valine, leucine and isoleucine biosynthesis swd00300   Lysine biosynthesis swd00310   Lysine degradation swd00330   Arginine and proline metabolism swd00332   Carbapenem biosynthesis swd00340   Histidine metabolism swd00350   Tyrosine metabolism swd00360   Phenylalanine metabolism swd00361   Chlorocyclohexane and chlorobenzene degradation swd00362   Benzoate degradation swd00364   Fluorobenzoate degradation swd00380   Tryptophan metabolism swd00400   Phenylalanine, tyrosine and tryptophan biosynthesis swd00401   Novobiocin biosynthesis swd00410   beta-Alanine metabolism swd00430   Taurine and hypotaurine metabolism swd00450   Selenocompound metabolism swd00460   Cyanoamino acid metabolism swd00470   D-Amino acid metabolism swd00480   Glutathione metabolism swd00500   Starch and sucrose metabolism swd00511   Other glycan degradation swd00520   Amino sugar and nucleotide sugar metabolism swd00521   Streptomycin biosynthesis swd00523   Polyketide sugar unit biosynthesis swd00525   Acarbose and validamycin biosynthesis swd00540   Lipopolysaccharide biosynthesis swd00541   O-Antigen nucleotide sugar biosynthesis swd00543   Exopolysaccharide biosynthesis swd00550   Peptidoglycan biosynthesis swd00552   Teichoic acid biosynthesis swd00561   Glycerolipid metabolism swd00562   Inositol phosphate metabolism swd00564   Glycerophospholipid metabolism swd00565   Ether lipid metabolism swd00590   Arachidonic acid metabolism swd00592   alpha-Linolenic acid metabolism swd00600   Sphingolipid metabolism swd00620   Pyruvate metabolism swd00621   Dioxin degradation swd00622   Xylene degradation swd00623   Toluene degradation swd00625   Chloroalkane and chloroalkene degradation swd00626   Naphthalene degradation swd00627   Aminobenzoate degradation swd00630   Glyoxylate and dicarboxylate metabolism swd00633   Nitrotoluene degradation swd00640   Propanoate metabolism swd00643   Styrene degradation swd00650   Butanoate metabolism swd00660   C5-Branched dibasic acid metabolism swd00670   One carbon pool by folate swd00680   Methane metabolism swd00730   Thiamine metabolism swd00740   Riboflavin metabolism swd00750   Vitamin B6 metabolism swd00760   Nicotinate and nicotinamide metabolism swd00770   Pantothenate and CoA biosynthesis swd00780   Biotin metabolism swd00785   Lipoic acid metabolism swd00790   Folate biosynthesis swd00860   Porphyrin metabolism swd00900   Terpenoid backbone biosynthesis swd00907   Pinene, camphor and geraniol degradation swd00910   Nitrogen metabolism swd00920   Sulfur metabolism swd00930   Caprolactam degradation swd00946   Degradation of flavonoids swd00997   Biosynthesis of various other secondary metabolites swd00999   Biosynthesis of various plant secondary metabolites swd01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

DBGET integrated database retrieval system