KEGG   PATHWAY: swd00230
Entry
swd00230                    Pathway                                
Name
Purine metabolism - Shewanella woodyi
Class
Metabolism; Nucleotide metabolism
Pathway map
swd00230  Purine metabolism
swd00230

Module
swd_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:swd00230]
swd_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:swd00230]
swd_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:swd00230]
swd_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:swd00230]
swd_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:swd00230]
Other DBs
GO: 0006163 0042278
Organism
Shewanella woodyi [GN:swd]
Gene
Swoo_4194  ADP-ribose diphosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
Swoo_4718  NUDIX hydrolase [KO:K08312] [EC:3.6.1.-]
Swoo_3547  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
Swoo_2275  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Swoo_3689  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Swoo_2980  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
Swoo_0295  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
Swoo_2745  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
Swoo_1564  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
Swoo_2744  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
Swoo_3322  phosphoribosylaminoimidazole carboxylase, ATPase subunit [KO:K01589] [EC:6.3.4.18]
Swoo_3321  phosphoribosylaminoimidazole carboxylase, catalytic subunit [KO:K01588] [EC:5.4.99.18]
Swoo_2078  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
Swoo_2707  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
Swoo_0296  phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Swoo_1792  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
Swoo_1539  metallophosphoesterase [KO:K01081] [EC:3.1.3.5]
Swoo_1952  5'-Nucleotidase domain protein [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Swoo_1951  5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Swoo_3345  stationary-phase survival protein SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Swoo_2746  HAD-superfamily hydrolase, subfamily IIA [KO:K02566] [EC:3.1.3.5]
Swoo_4719  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K20881] [EC:3.1.3.-]
Swoo_1799  Inosine kinase [KO:K00892] [EC:2.7.1.73]
Swoo_3546  purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
Swoo_3422  purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
Swoo_3884  purine nucleoside phosphorylase [KO:K03784] [EC:2.4.2.1]
Swoo_3721  protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Swoo_3818  hypoxanthine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
Swoo_1559  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
Swoo_1783  Nucleoside-diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Swoo_0862  protein of unknown function DUF84 [KO:K01529] [EC:3.6.1.73]
Swoo_1327  non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family [KO:K01519] [EC:3.6.1.66]
Swoo_1560  GMP synthase, large subunit [KO:K01951] [EC:6.3.5.2]
Swoo_4581  Guanylate kinase [KO:K00942] [EC:2.7.4.8]
Swoo_2303  ribonucleoside-diphosphate reductase, alpha subunit [KO:K00525] [EC:1.17.4.1]
Swoo_2302  Ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
Swoo_3049  anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
Swoo_2264  deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
Swoo_2265  metal dependent phosphohydrolase [KO:K08722] [EC:3.1.3.89]
Swoo_4583  (p)ppGpp synthetase I, SpoT/RelA [KO:K01139] [EC:2.7.6.5 3.1.7.2]
Swoo_0515  Ppx/GppA phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
Swoo_3353  (p)ppGpp synthetase I, SpoT/RelA [KO:K00951] [EC:2.7.6.5]
Swoo_1225  putative adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
Swoo_0484  putative adenylate cyclase [KO:K05851] [EC:4.6.1.1]
Swoo_4219  Adenylosuccinate synthase [KO:K01939] [EC:6.3.4.4]
Swoo_1121  adenosine deaminase [KO:K01488] [EC:3.5.4.4]
Swoo_3459  conserved hypothetical protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
Swoo_1926  5'-Nucleotidase domain protein [KO:K01119] [EC:3.1.4.16 3.1.3.6]
Swoo_1798  Nucleoside-triphosphate--adenylate kinase [KO:K00939] [EC:2.7.4.3]
Swoo_3352  MazG family protein [KO:K04765] [EC:3.6.1.9]
Swoo_4192  Calcineurin phosphoesterase domain protein [KO:K03651] [EC:3.1.4.53]
Swoo_1012  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
Swoo_1689  Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
Swoo_1687  sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
Swoo_1686  sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
swd00030  Pentose phosphate pathway
swd00220  Arginine biosynthesis
swd00250  Alanine, aspartate and glutamate metabolism
swd00260  Glycine, serine and threonine metabolism
swd00340  Histidine metabolism
swd00630  Glyoxylate and dicarboxylate metabolism
swd00730  Thiamine metabolism
swd00740  Riboflavin metabolism
swd00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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