KEGG   PATHWAY: swd00010
Entry
swd00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Shewanella woodyi
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
swd00010  Glycolysis / Gluconeogenesis
swd00010

Module
swd_M00002  Glycolysis, core module involving three-carbon compounds [PATH:swd00010]
swd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:swd00010]
swd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:swd00010]
Other DBs
GO: 0006096 0006094
Organism
Shewanella woodyi [GN:swd]
Gene
Swoo_0562  ROK family protein [KO:K25026] [EC:2.7.1.2]
Swoo_1279  Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Swoo_3770  Inositol phosphatase/fructose-16-bisphosphatase [KO:K03841] [EC:3.1.3.11]
Swoo_0879  fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
Swoo_3565  Triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
Swoo_2393  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Swoo_2395  glyceraldehyde-3-phosphate dehydrogenase, type I [KO:K00134] [EC:1.2.1.12]
Swoo_0878  Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
Swoo_4877  phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [KO:K15633] [EC:5.4.2.12]
Swoo_3350  Phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
Swoo_2541  pyruvate kinase [KO:K00873] [EC:2.7.1.40]
Swoo_2715  phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
Swoo_0319  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Swoo_0320  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Swoo_0321  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Swoo_1137  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Swoo_1138  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Swoo_0375  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
Swoo_2241  iron-containing alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
Swoo_1359  iron-containing alcohol dehydrogenase [KO:K13954] [EC:1.1.1.1]
Swoo_2255  PQQ-dependent dehydrogenase, methanol/ethanol family [KO:K00114] [EC:1.1.2.8]
Swoo_2254  Aldehyde Dehydrogenase [KO:K00138] [EC:1.2.1.-]
Swoo_2725  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Swoo_0651  Aldose 1-epimerase [KO:K01785] [EC:5.1.3.3]
Swoo_2275  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Swoo_1915  Aldose 1-epimerase [KO:K01792] [EC:5.1.3.15]
Swoo_4740  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Swoo_2190  PTS system, glucose subfamily, IIA subunit [KO:K02777] [EC:2.7.1.-]
Swoo_3287  phosphotransferase system EIIC [KO:K02779] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
swd00020  Citrate cycle (TCA cycle)
swd00030  Pentose phosphate pathway
swd00500  Starch and sucrose metabolism
swd00620  Pyruvate metabolism
swd00640  Propanoate metabolism
swd00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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