KEGG   PATHWAY: tpaa03030
Entry
tpaa03030                   Pathway                                
Name
DNA replication - Treponema paraluiscuniculi L2
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tpaa03030  DNA replication
tpaa03030

Organism
Treponema paraluiscuniculi L2 [GN:tpaa]
Gene
TPLL2_0643  dnaQ; DNA-directed DNA polymerase III epsilon subunit [KO:K02342] [EC:2.7.7.7]
TPLL2_0669  dnaE; DNA-directed DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
TPLL2_0521  dnaZX1; DNA-directed DNA polymerase III gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
TPLL2_1005  dnaZX2; DNA-directed DNA polymerase III gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
TPLL2_0587  holA; DNA-directed DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
TPLL2_0002  dnaN; DNA-directed DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
TPLL2_0058  dnaB; replicative DNA helicase DnaB [KO:K02314] [EC:5.6.2.3]
TPLL2_0492  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
TPLL2_0062  ssb1; single-strand DNA-binding protein [KO:K03111]
TPLL2_0353  rnhA; ribonuclease H [KO:K03469] [EC:3.1.26.4]
TPLL2_0634  lig; DNA ligase (NAD(+)) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

DBGET integrated database retrieval system