KEGG   PATHWAY: tre04144
Entry
tre04144                    Pathway                                
Name
Endocytosis - Trichoderma reesei QM6a
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
tre04144  Endocytosis
tre04144

Other DBs
GO: 0006897
Organism
Trichoderma reesei QM6a [GN:tre]
Gene
TRIREDRAFT_23263  ADP-ribosylation factor [KO:K07941]
TRIREDRAFT_72459  phosphatidylinositol-4-phosphate 5-kinase [KO:K00889] [EC:2.7.1.68]
TRIREDRAFT_79019  hypothetical protein [KO:K01115] [EC:3.1.4.4]
TRIREDRAFT_78611  phospholipase D/transphosphatidylase [KO:K01115] [EC:3.1.4.4]
TRIREDRAFT_55631  phospholipase [KO:K01115] [EC:3.1.4.4]
TRIREDRAFT_123228  clathrin heavy chain-like protein [KO:K04646]
TRIREDRAFT_55318  adaptor protein complex alpha-adaptin subunit [KO:K11824]
TRIREDRAFT_74731  AP-2 adaptor complex, beta-adaptin subunit [KO:K11825]
TRIREDRAFT_111922  adaptor protein complex AP-2, medium chain [KO:K11826]
TRIREDRAFT_55550  adaptor protein complex AP-2 small subunit [KO:K11827]
TRIREDRAFT_21752  hypothetical protein [KO:K12562]
TRIREDRAFT_52550  epsin-like clathrin-binding protein [KO:K12471]
TRIREDRAFT_121975  hypothetical protein [KO:K12471]
TRIREDRAFT_119762  endocytic protein [KO:K12472]
TRIREDRAFT_68130  hypothetical protein [KO:K19366]
TRIREDRAFT_57334  hypothetical protein [KO:K10591] [EC:2.3.2.26]
TRIREDRAFT_2241  hypothetical protein [KO:K23612]
TRIREDRAFT_111468  actin-like protein [KO:K17260]
TRIREDRAFT_123408  hypothetical protein [KO:K18584]
TRIREDRAFT_2660  hypothetical protein [KO:K05757]
TRIREDRAFT_105202  hypothetical protein [KO:K05758]
TRIREDRAFT_63102  hypothetical protein [KO:K05756]
TRIREDRAFT_59280  ARP2/3 complex 20 kDa subunit [KO:K05755]
TRIREDRAFT_2439  ARP2/3 complex protein [KO:K05754]
TRIREDRAFT_55362  hypothetical protein [KO:K03283]
TRIREDRAFT_122572  hsp70 family protein [KO:K03283]
TRIREDRAFT_122743  hypothetical protein [KO:K10364]
TRIREDRAFT_78961  hypothetical protein [KO:K10365]
TRIREDRAFT_22531  vacuolar sorting protein [KO:K18467]
TRIREDRAFT_63815  vacuolar sorting protein [KO:K18466]
TRIREDRAFT_71374  vacuolar sorting protein [KO:K18468]
TRIREDRAFT_106014  Golgi membrane sorting nexin [KO:K17918]
TRIREDRAFT_5598  hypothetical protein [KO:K11866] [EC:3.4.19.12]
TRIREDRAFT_60331  small GTPase of the Rab/Ypt family [KO:K07897]
TRIREDRAFT_122546  hypothetical protein [KO:K12182]
TRIREDRAFT_70251  hypothetical protein [KO:K04705]
TRIREDRAFT_108706  hypothetical protein [KO:K12183]
TRIREDRAFT_62477  vacuolar sorting protein [KO:K12184]
TRIREDRAFT_58638  hypothetical protein [KO:K12188]
TRIREDRAFT_56169  hypothetical protein [KO:K12190]
TRIREDRAFT_64485  hypothetical protein [KO:K12189]
TRIREDRAFT_5250  hypothetical protein [KO:K12195]
TRIREDRAFT_81214  hypothetical protein [KO:K12194]
TRIREDRAFT_23063  hypothetical protein [KO:K12193]
TRIREDRAFT_120940  hypothetical protein [KO:K12191]
TRIREDRAFT_75072  hypothetical protein [KO:K15053]
TRIREDRAFT_123767  vacuolar sorting protein [KO:K12196]
TRIREDRAFT_102941  hypothetical protein [KO:K12199]
TRIREDRAFT_121169  hypothetical protein [KO:K12197]
TRIREDRAFT_65200  hypothetical protein [KO:K12198]
TRIREDRAFT_120070  Hypothetical protein [KO:K19476]
TRIREDRAFT_124132  hypothetical protein [KO:K12200]
TRIREDRAFT_123111  vacuolar sorting protein [KO:K17917]
TRIREDRAFT_119871  rho1; hypothetical protein [KO:K04513]
TRIREDRAFT_53562  small RAS-like GTPase, rho family [KO:K04513]
TRIREDRAFT_122593  rab5-like GTPase [KO:K07889]
TRIREDRAFT_123015  rab5-like GTPase [KO:K07889]
TRIREDRAFT_21288  hypothetical protein [KO:K12481]
TRIREDRAFT_82519  hypothetical protein [KO:K12479]
TRIREDRAFT_123562  sorting nexin [KO:K17919]
TRIREDRAFT_121223  secretion-related GTPase [KO:K07901]
TRIREDRAFT_5209  Ras-GTPase [KO:K07904]
TRIREDRAFT_55060  kinesin [KO:K10396]
TRIREDRAFT_50335  cdc42; cell division control protein [KO:K04393]
TRIREDRAFT_120412  hypothetical protein [KO:K12486]
TRIREDRAFT_76543  hypothetical protein [KO:K12488]
TRIREDRAFT_48835  hypothetical protein [KO:K12492]
TRIREDRAFT_44849  hypothetical protein [KO:K12493]
TRIREDRAFT_43877  guanine nucleotide exchange factor for ADP ribosylation factors [KO:K18442]
TRIREDRAFT_55415  guanine nucleotide exchange factor for ADP ribosylation factors [KO:K18443]
TRIREDRAFT_45604  ADP-ribosylation factor GTPase of the ras superfamily [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
tre04070  Phosphatidylinositol signaling system
tre04130  SNARE interactions in vesicular transport
KO pathway
ko04144   
LinkDB

DBGET integrated database retrieval system