KEGG   COMPOUND: C00035
Entry
C00035                      Compound                               
Name
GDP;
Guanosine 5'-diphosphate;
Guanosine diphosphate
Formula
C10H15N5O11P2
Exact mass
443.0243
Mol weight
443.20
Structure
Remark
Same as: G10620
Reaction
R00328 R00330 R00332 R00335 R00336 R00337 R00394 R00430
R00431 R00432 R00439 R00517 R00883 R00887 R00890 R00968
R01009 R01135 R01517 R02019 R02168 R02405 R02890 R03129
R03378 R03519 R03768 R03769 R03829 R04081 R04082 R04331
R04502 R04553 R04646 R05002 R05106 R05768 R06558 R07257
R08692 R08858 R08947 R09399 R09400 R09666 R09667 R09733
R09734 R09752 R10439 R11203 R11229 R11497 R11601 R11702
R11703 R11704 R11937 R11938 R12012 R12338 R12339 R12340
R12472 R12525 R12526 R12529 R12608 R12747
Pathway
map00230  Purine metabolism
map01100  Metabolic pathways
map01232  Nucleotide metabolism
map04014  Ras signaling pathway
map04015  Rap1 signaling pathway
map04137  Mitophagy - animal
map04140  Autophagy - animal
map04144  Endocytosis
Module
M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP
M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Enzyme
1.17.4.1        2.4.1.29        2.4.1.32        2.4.1.33        
2.4.1.36        2.4.1.48        2.4.1.54        2.4.1.65        
2.4.1.69        2.4.1.83        2.4.1.110       2.4.1.132       
2.4.1.142       2.4.1.152       2.4.1.217       2.4.1.246       
2.4.1.251       2.4.1.252       2.4.1.269       2.4.1.270       
2.4.1.308       2.4.1.344       2.4.1.345       2.4.1.346       
2.4.1.348       2.4.1.349       2.4.1.353       2.4.1.361       
2.4.1.370       2.4.1.371       2.4.1.374       2.4.1.-         
2.5.1.135       2.7.1.40        2.7.1.48        2.7.1.81        
2.7.1.156       2.7.1.190       2.7.1.237       2.7.2.10        
2.7.4.6         2.7.4.8         2.7.4.34        2.7.7.8         
2.7.7.22        2.7.7.78        2.7.7.88        3.1.7.2         
3.2.1.42        3.6.1.5         3.6.1.6         3.6.1.42        
3.6.5.1         3.6.5.2         3.6.5.3         3.6.5.4         
3.6.5.5         3.6.5.6         4.1.1.32        6.2.1.4         
6.2.1.10        6.3.2.31        6.3.2.34        6.3.4.4
 » show all
Brite
Compounds with biological roles [BR:br08001]
 Nucleic acids
  Nucleotides
   Ribonucleotides
    C00035  GDP
Other DBs
CAS: 146-91-8
PubChem: 3337
ChEBI: 17552
PDB-CCD: GDP[PDBj]
NIKKAJI: J40.056D
LinkDB
KCF data

ATOM        28
            1   N4y N    29.0166  -14.4798
            2   C8y C    30.0765  -15.2194
            3   C1y C    27.7235  -14.8990
            4   C8x C    29.4941  -13.0820
            5   C8y C    31.3170  -14.3109
            6   N5x N    30.2163  -16.6406
            7   O2x O    26.5879  -14.0431
            8   C1y C    27.2927  -16.1513
            9   N5x N    30.9443  -13.0878
            10  C8y C    32.5692  -14.8643
            11  C8y C    31.5385  -17.2288
            12  C1y C    25.4813  -14.8409
            13  C1y C    25.9123  -16.1513
            14  O1a O    28.1022  -17.2869
            15  N4x N    32.7324  -16.3551
            16  O5x O    33.6816  -14.0372
            17  N1a N    31.6898  -18.6150
            18  C1b C    24.1534  -14.4099
            19  O1a O    25.4639  -17.4734
            20  O2b O    23.1167  -15.3360
            21  P1b P    21.7248  -15.3360
            22  O2c O    20.3329  -15.3360
            23  O1c O    21.7190  -16.7338
            24  O1c O    21.7190  -13.9439
            25  P1b P    18.9408  -15.3301
            26  O1c O    18.9992  -16.7279
            27  O1c O    17.5430  -15.3301
            28  O1c O    18.9992  -13.9382
BOND        30
            1     1   2 1
            2     3   1 1 #Up
            3     1   4 1
            4     2   5 2
            5     2   6 1
            6     3   7 1
            7     3   8 1
            8     4   9 2
            9     5  10 1
            10    6  11 2
            11    7  12 1
            12    8  13 1
            13    8  14 1 #Down
            14   10  15 1
            15   10  16 2
            16   11  17 1
            17   12  18 1 #Up
            18   13  19 1 #Down
            19   18  20 1
            20   20  21 1
            21   21  22 1
            22   21  23 1
            23   21  24 2
            24   22  25 1
            25   25  26 1
            26   25  27 1
            27   25  28 2
            28    5   9 1
            29   11  15 1
            30   12  13 1

» Japanese version

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