Paraburkholderia caffeinilytica: DSC91_001298
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Entry
DSC91_001298 CDS
T06448
Name
(GenBank) RND transporter
KO
K18139
outer membrane protein, multidrug efflux system
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf01501
beta-Lactam resistance
pcaf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DSC91_001298
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
DSC91_001298
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcaf02000
]
DSC91_001298
01504 Antimicrobial resistance genes [BR:
pcaf01504
]
DSC91_001298
Transporters [BR:
pcaf02000
]
Other transporters
Pores ion channels [TC:
1
]
DSC91_001298
Antimicrobial resistance genes [BR:
pcaf01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
DSC91_001298
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
DSC91_001298
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
DSC91_001298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
YkyA
MqsA_antitoxin
Motif
Other DBs
NCBI-ProteinID:
AXL49469
LinkDB
All DBs
Position
1:1370406..1371809
Genome browser
AA seq
467 aa
AA seq
DB search
MLGPDYVRPSIETSATFRFSEGAQSQIADTAWWEQFGDPVLNELISTALAQNKDLQIAAA
RVDEFRGQFVSTRSQLFPQVSAGFNAGRQRVSPLAQASLPPGVGTAYDSFNATLPISWEL
DVFGRVRRQTEAARASLFASEEGRRATILTLVSSVATSYINLRNLDQQLEIANATVASRA
GSVKVFELRFRAGEISQVELAQSQSEYEASLAEVPAIEAQIGQQEDALSVLLGRNPGPVL
RGRTLETLQAPNVPAALPSELLERRPDVLQAEQNLIAANALIGAARALYFPQISLTGLFG
STSTQLAKLFSGPANTWSFAGALTAPIFTAGNIAGQVNQAQAQQQEALFSYQKTIQSAFQ
EVSDALIGVQKSRERLAAQQRQVDALIAYSKLARARYEGGYTSYMEVLDAERSLFNAQLG
YTQTRSNEYISLVTLYKAMGGGWGVDTPAGSRPGGDVAQAFEGAASQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgctcggccccgactacgtgcggccgtcaatcgaaacgtcggccacgttccggttttcg
gagggtgctcagtcgcagatcgccgatacggcgtggtgggagcagttcggtgatcctgtg
cttaacgaactgatttcaacggcgctcgcgcagaacaaggacttgcaaatcgcggccgcc
cgggtcgatgaattccgcggccaattcgtcagtacgcgttcgcagctgtttccgcaggtg
agcgcgggcttcaatgccgggcgccagcgtgtctcgccactcgcacaggcgtcgctgccg
ccgggtgtcggcacggcctacgactcattcaatgccaccttgcccatctcgtgggaactc
gacgtgttcggccgagtgcggcggcagaccgaggcggcgcgcgctagtctgttcgccagt
gaagaaggccggcgcgcgaccattctcacgctcgtgtcgtccgtggcgacctcgtatatc
aatctgcgaaatctcgatcagcaactggagatcgcgaatgccaccgtggcgagccgcgcc
gggtcggtcaaagtattcgagctgcgtttcagggccggggaaatctcgcaggtcgagctg
gcgcagagtcagtcggaatacgaggcctcgctcgccgaagtgccagccattgaggcgcag
atcgggcaacaggaagatgcgctctccgtgctgctcggccgcaatccgggccccgttctt
cgtggccgtacgctcgaaacgcttcaggctccgaacgtgccggcggcgttgccttcggaa
ttgcttgagcgccgccccgacgtgctgcaggcggaacagaatctgattgccgccaacgcg
ctgatcggcgcggcgcgcgcgctatattttccccagatttcgttgacggggctgtttggc
tcgacgagcacccagctagccaaacttttcagcggaccggcgaatacgtggtcgttcgcc
ggtgcgctcacggcgccgatctttaccgccggcaatattgccggtcaggtcaatcaggcg
caggcgcaacaacaggaagcgctgttttcttaccagaagacgatccagtccgcgttccag
gaggtgagcgacgcactgatcggcgtgcagaagtcgcgcgaacgattagccgcacagcag
cgccaggtggatgcgttgatcgcgtactcgaagctcgcccgggcgcgctacgaaggcggt
tataccagctatatggaagtgctcgacgccgagcgcagccttttcaacgcgcaactgggc
tatacgcaaacccgcagtaacgaatacatatcgctcgtgacgctttataaggcgatgggc
ggcggatggggcgtcgacacgccggctggatcgcgtccgggcggagatgtcgctcaagcg
tttgagggcgcagcgtctcaatga
DBGET
integrated database retrieval system
