Paraburkholderia caffeinilytica: DSC91_005348
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Entry
DSC91_005348 CDS
T06448
Name
(GenBank) RND transporter
KO
K18139
outer membrane protein, multidrug efflux system
Organism
pcaf
Paraburkholderia caffeinilytica
Pathway
pcaf01501
beta-Lactam resistance
pcaf02024
Quorum sensing
Module
pcaf_M00642
Multidrug resistance, efflux pump MexJK-OprM
Brite
KEGG Orthology (KO) [BR:
pcaf00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DSC91_005348
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
DSC91_005348
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcaf02000
]
DSC91_005348
01504 Antimicrobial resistance genes [BR:
pcaf01504
]
DSC91_005348
Transporters [BR:
pcaf02000
]
Other transporters
Pores ion channels [TC:
1
]
DSC91_005348
Antimicrobial resistance genes [BR:
pcaf01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
DSC91_005348
Multidrug resistance, efflux pump MexJK-OprM [MD:
M00642
]
DSC91_005348
Multidrug resistance, efflux pump MexXY-OprM [MD:
M00643
]
DSC91_005348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
DASH_Spc19
FliJ
Motif
Other DBs
NCBI-ProteinID:
AXL52371
LinkDB
All DBs
Position
2:complement(2126849..2128390)
Genome browser
AA seq
513 aa
AA seq
DB search
MQFDRIARTRALAPRALTITVAAALATVVAGCAVGPDYKRPAAEIPASYKEAAPGWKVAQ
PADQHDRGDWWTIYEDPQLNTLEDKLNTSNQTIAQFAAAYRQARALVGEARAAYFPTVGA
SAGVTRSGNGSGSTTTTSSRSGVSNSFNVQLDASWEPDLWGSVTRSVNSQKAGQQGAAAD
LANARLSAQATLAQTYFSLRALDSTQKLLDDTVAAYQRSLQLTQNQYAAGVAARSDVIQA
QTQLQSAQAAAIDNGVQRAQDEHAIAVLVGEPASSFSIPPMPLTATPPAVPAQMPSALLE
RRPDIASAERKAAAANEQIGVAIAAFFPTLTLSATGGFENSVFSQLLTAPSRFWTLGPQL
AATIFDAGLREAKTEAARATYDQDVATYRQTILTAFQDVEDNLASLRILEQEIVVQQQAV
DSARQALAIVTNEYKAGTVGYVNVLTAQTTAFTAEQKLETIAGQRMVSSVGLVKALGGGW
DASQMNRETGDVAAPAPLPASSVSSATPVAQSN
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttgatcgaatcgcgcgcacgcgggcgcttgcgccccgcgccctgaccatcacg
gtagccgcggcgctcgccaccgtagtagccggttgcgccgtcggccccgactacaagcgg
cccgcggccgagatccccgcgtcctacaaggaagccgcgcccggctggaaagtcgcccaa
ccggccgatcagcacgaccgcggcgactggtggaccatttatgaagacccgcaactcaat
acgctcgaagacaagctgaacacgtcgaaccagaccatcgcccaatttgccgccgcctat
cgccaggcgcgtgcactggttggcgaagcacgcgcggcgtacttcccgaccgtcggcgca
tcggcgggcgttacgcgctccggcaatggttcaggcagcacgaccaccacctcgagccgt
tccggcgtcagcaacagcttcaacgtgcaactcgacgcaagctgggagccggacctgtgg
ggctcggtcacgcggtcggtcaattcgcagaaggccggccagcagggcgccgccgccgat
ctggcgaatgcgcggctgtccgcccaggccacgctcgcgcaaacctacttctcgctgcgc
gcgctcgactccacccagaagctcctcgacgacaccgtcgcagcctatcagcgctcgctg
caactcacgcagaaccagtacgcagccggcgtcgccgcgcgctccgacgtgattcaggcg
caaactcagttgcaatcggcacaggcggccgcgatcgacaatggtgtgcagcgcgcccag
gacgagcacgcgatcgccgtactcgtcggcgaaccggcctcgagcttctcgattccgccg
atgccgctcaccgccacgccgcccgccgtgcccgcgcaaatgccgtcggcgctgctcgag
cggcgtccggatatcgcatcggctgagcgcaaggcggcggcggcgaacgaacagatcggc
gtcgcgatcgccgcgttcttcccgacgctgacgctgtcggccacgggcggtttcgaaaat
tcggtgttctcgcaattgctgaccgcgccgtcgcgcttctggacgctcggcccgcaactc
gccgccacgattttcgacgccggcttgcgcgaggcaaagaccgaagccgctcgtgcgacc
tacgaccaggacgtcgcgacgtaccgtcaaacgattctgacggcgttccaggacgtcgag
gacaatctcgcctcgctgcgcatcctcgaacaggaaatcgtcgtgcagcagcaagcggtg
gattcggcgcgtcaggcgctggccatcgtcacgaacgaatacaaggcgggtacggtcggt
tacgtcaacgtgctgaccgcgcagaccacggccttcacggccgagcagaagctcgagacc
atcgccgggcagcggatggtgtcgtcggtgggtctggtgaaggcgctcggcggcggttgg
gatgcgtcgcaaatgaaccgcgaaaccggcgatgtggcggcgcccgcgccgctgccggcg
tcatcggtctcatcggcgacgccggtggcgcaaagcaactag
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