KEGG   PATHWAY: phas03030
Entry
phas03030                   Pathway                                
Name
DNA replication - Phyllostomus hastatus (greater spear-nosed bat)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
phas03030  DNA replication
phas03030

Organism
Phyllostomus hastatus (greater spear-nosed bat) [GN:phas]
Gene
123805650  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
123806501  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
123806508  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
123807484  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
123810371  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
123810645  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
123811736  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
123811805  RPA3; replication protein A 14 kDa subunit [KO:K10740]
123812148  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
123812710  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
123815383  PCNA; proliferating cell nuclear antigen [KO:K04802]
123815771  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
123817044  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
123818818  RFC3; replication factor C subunit 3 [KO:K10756]
123820258  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
123820950  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
123821623  PRIM2; DNA primase large subunit [KO:K02685]
123822040  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
123822453  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
123822562  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
123823154  RFC5; replication factor C subunit 5 [KO:K10756]
123825235  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
123825859  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
123826250  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
123826957  RFC4; replication factor C subunit 4 [KO:K10755]
123828406  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
123829369  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
123829424  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
123829502  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
123829512  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
123829823  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
123830022  POLA1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
123830255  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
123830258  [KO:K02327] [EC:2.7.7.7]
123831884  RPA2; replication protein A 32 kDa subunit [KO:K10739]
123833042  [KO:K04802]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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