Parus major (Great Tit): 107200514
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Entry
107200514 CDS
T04864
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pmaj
Parus major (Great Tit)
Brite
KEGG Orthology (KO) [BR:
pmaj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pmaj03036
]
107200514 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pmaj03400
]
107200514 (SMCHD1)
Chromosome and associated proteins [BR:
pmaj03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
107200514 (SMCHD1)
DNA repair and recombination proteins [BR:
pmaj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
107200514 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
107200514
NCBI-ProteinID:
XP_015474619
LinkDB
All DBs
Position
2:complement(102831966..102896833)
Genome browser
AA seq
2031 aa
AA seq
DB search
MAAAAGGGRAPRRPALLTPRGNGDRTVFVFDRRREQADPNEKVLSYSKDSYRAFRSAVCQ
AFGIPSDETFVITTTNRKEITEDNFSALVHEGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPATSQDVHELVLSKEDFEKKEKNKEAIYTGFIQNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NTVTKEISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRSDISSKRMQSPWTMYAA
IEWDGKTYKTGQLVKTVKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHATHLTNRIRPILEASGLTLKHEDIPVATKCVIKGVIAKGCVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
VQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQILKARFEVLNCRDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQVKHQDEISCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLVAGSPAKLQLVD
WPELEKPVAVINGRELQRPLIVQLCDQWGNPASEPNVKISLTKSNNLKLVPSNQQHKTDD
TGRANLGIFSIHAPRGEHIIQLKASYNKTVLDCLVITINVLPDPEKPVCLNVKYDKSPSF
PAGSTFPDFMVSVLSEDDTIIKNINPARISMKMWEAQSSRVRTPIDVTTFSCSKVKDDKE
DGFFYFRDKVVPERVGTYIIQFSFAMDKTNMLNSEQIIVEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLDGRIIAKIKSPNEEDKEIPQFQGKVSTVE
FPLESGSAEINLVLAEDSPGRDSTEYILIFEPHLPALKKRLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLIAEIKCQVKEAETREAFLKNELKKHQIELPQAN
TIQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWSRPLPHLRNGRTFFRP
IGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVIKLDNVN
KDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPMMLDITD
TPIPPKRMRRDTAKKLYSSEEWIFSSAHQQQQQVLHMAPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcgggaggcggccgcgcacctcgcaggccggcgctgctgaccccccgc
ggcaacggggaccgcaccgtgttcgtcttcgaccggcgccgggagcaggcggacccgaac
gagaaagtgctcagctacagcaaggacagctaccgcgctttccgcagcgccgtctgccag
gcatttggcataccctctgatgaaacctttgttatcaccacaacaaataggaaggaaatt
acagaagataacttcagtgcacttgttcatgagggagttactttgtatctgctacagtca
gttgatcaaatgttgcttttggcaaccaaggaacggatcgactttctgccccactatgat
acacttgtcaaaagtggtatgtacgagtactacgccagcgagggccaaaatcctttgccg
tttgcccttgctgaattgattgacaattctctgtcagctacatctcaaaatactggtatt
cggagtatacagataaaattgttgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacttctaagcagcttaacaattgggctgtatatagattg
tcaaagtttacaagacaaggtgactttgaaagtgatcattcaggatacgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagca
gtgttcttcgtgggacaatctgccagaatgataagcaaacctgcaacatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcaaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaaact
aatactgtaacaaaagaaataagccctttcaacaacatcgacattcagatttcaatgttt
gaaaagggaaaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagatagttttgaatttaaggcgcatgttgaagaagaaggc
atagtcgaaggcatcatccgttaccatcccttcttgtatgataaagaaacgtaccctgat
gacccatgttttccatcaagattaaatgatgatgatgatgacgactgttttatagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaatacca
tacacgactgtggaagattttgactggtgtgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaataccctgttc
acgagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagactgtcatgaaaaatacgacaaacagataaaattcacagtctttaaaggaata
actgtacgttctgatatatcatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacttacaaaactggacagctagtgaaaactgttaagactcat
ccaatattctatggaagcattgagaaattctacttgtatggggaccatgatggggatata
tttgccactgggggagaggttcaaattgctttggaaccacaggcattgtatgctgaaaca
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
atagaggatgaaatggcaagacttcctgacaagttatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattctgcattcacctactgagaataaagaaatc
atttcccatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggcaactactccttgaaactgcaagtagtactgaatgaaagtaatgca
gacacttacgctggaaggcctctgccatctaaagtatttaaatttactattgtagagggc
aaaccagagaaatttttggtgggtctcttggagcttccttttcgaattggagtgcctttt
agtattcctttggaattgcaggatgaatttggtcatgcaacacacttgacaaatcgtatc
agaccaattctggaagctagtggattaacactgaagcatgaagacatacctgtggcaaca
aagtgtgtcattaagggtgttatagccaaaggctgtgtaaatagttgccagggaaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcgtcaattgaaagtaaaaccagattcagaaattctaaagata
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gtgcagccagagttaattgttcactgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttgactggtccagttatacatgtacag
aatatcaagaaagaccagatactgaaagcaaggtttgaagtacttaattgcagagatgtg
ccaccagtggagaagattataaaacttcttcctagcagtcatgttgcaagactacaagtc
ttaagtatgaatggacaaaaagctcttcaggttaaacatcaggatgaaatcagctgtgtt
gctggccaagtcatgaacaaacttatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaaattaaggttaactggacacctaaaattgacaga
gagctgttgatgcagggattattacctgatgtaaaagtaccaacttcagtaaaagatgta
cgttactgtctaattacgtaccttgatgagcacgtgtctttggagagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaagggctcaaacacattg
cagatgggtgaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatttgaaagtaacttggcaggaaagtactcaaacaatgaaagtaaaaggt
attcgatataaaccctgtttacttggaagcaaagaactgtgctttgcttggcgtgaattt
tctgactttatcagagtgaatttagtagcaggatccccagctaaactgcagcttgtggat
tggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgaccagtggggaaatccagcttctgaacctaatgtcaaaatcagc
cttacaaagagcaacaacttaaagcttgttccttcaaaccagcaacataaaacggatgac
actggtagggctaacctgggaatttttagtattcacgcacctaggggagagcacattata
cagcttaaagcctcatacaacaagacagtattggattgtcttgtaatcacaataaatgtc
ctgcctgatcctgagaaacctgtctgcttaaatgttaaatatgacaaaagtccttctttt
ccagcaggaagtaccttccctgattttatggttagtgttctttctgaagatgacaccatt
attaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
gttaggacaccaattgatgttacaacgttcagctgtagtaaagtgaaggatgacaaggaa
gatggcttcttctacttcagagataaagtggttccagagagagtgggcacttacattatc
caattttcctttgcaatggataagacaaatatgctcaacagcgaacagattatagttgaa
gttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggacttgatctagatggcagaataatagcaaaaattaaa
agccccaatgaagaagataaagagatcccgcagtttcagggaaaagtcagtacagtagag
tttccattggagagtggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttatctttgagccacatctgccagctttgaaaaaacgt
ttggaaccatactgtctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacactgaccagggagaaagaccagttatctaagtccatagatctttacagaaagatg
tttgatactacaaatcagctcatagctgaaattaaatgtcaggttaaagaagctgaaaca
agagaagctttcctgaagaatgaactgaaaaagcaccaaattgaattaccacaggcaaac
acaattcagtatgtggattctcttcttaaaaaaaagatgttagaacaagaaggagtaatg
aagcagccaaggagaacttgtaccctcccaaactatccaaaaggcaaccaggatattcta
ggcaagatcgcgcatttagctcaaatagaggataatgaagcagcaaaagttatctcttgg
cacctggcaagtgacatggactgtgtagtcacattgaccacggaagctgctcgttctatc
ttcgatgaaactcaaggtcgacaacaagtgttacctcttgattcgatttacaagaagacg
cttccagattggagcagacctttacctcacttgagaaatggaagaaccttcttcagacct
attggaaatcctgtatttgccagagatctgttaacatttccagataacatagagcattgt
caaacagtgtttggtatgctcttgggtgatactatcataatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgcctaaactttactctactttctct
ggacagatagatcttcttcagcaataccgtgcagcagtgattaaacttgataatgtgaat
aaggaccttgatttgcatttgcagtcactgaacactccagaaatgcaaaagaaaaaacag
gaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcct
gctttatcagataaaggtgctgaatcattacttcagcctatgatgttagatataactgac
actcccattcctcccaaaagaatgcgaagagacacagcaaaaaaattgtatagctcagaa
gaatggatcttctcttctgcacaccagcagcaacagcaagtactgcacatggccccttca
gaacttaatggaactccacgaaaaagaaaggcatag
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integrated database retrieval system
